Harpadon microchir
GC content
46.54%
Whole genome
Non-coding
498 bp
D-loop 432 bp
Where Harpadon microchir sits among 2,335 species
Whole-genome GC content against maximum lifespan. Harpadon microchir has the 1,920th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,061 bp
- GC skew (G − C) / (G + C)
- −0.269
- AT skew (A − T) / (A + T)
- −0.002
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,061 bp
Protein-coding11,410 bp
12S rRNA946 bp
16S rRNA1,662 bp
All tRNA1,549 bp
D-loop432 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.51% | −0.336 | −0.120 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 47.56% | −0.454 | −0.071 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.84% | −0.167 | −0.124 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.85% | −0.254 | −0.005 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 42.26% | −0.380 | +0.052 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 44.59% | −0.430 | −0.161 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 47.58% | −0.257 | −0.112 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 48.15% | −0.420 | −0.132 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 53.20% | −0.430 | −0.065 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 47.29% | −0.345 | −0.099 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 46.71% | −0.385 | −0.033 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 49.62% | −0.367 | +0.407 | |||||
| CYTBCytochrome b | 1,141 bp | 44.61% | −0.285 | −0.146 | |||||
| 12S rRNA12S ribosomal RNA | 946 bp | 47.89% | −0.095 | +0.160 | |||||
| 16S rRNA16S ribosomal RNA | 1,662 bp | 45.55% | −0.104 | +0.218 | |||||
| D-loopControl region (D-loop) | 432 bp | 40.51% | −0.291 | +0.160 |
Codon usage
Counts per codon, darker is more frequent3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU124
UUC117
Leu L17.4%
UUA77
UUG32
CUU173
CUC170
CUA162
CUG50
Ile I7.1%
AUU176
AUC95
Met M3.9%
AUA84
AUG66
Val V6.0%
GUU74
GUC55
GUA62
GUG36
Ser S6.4%
UCU52
UCC82
UCA50
UCG7
AGU14
AGC40
Pro P5.8%
CCU59
CCC111
CCA43
CCG7
Thr T7.8%
ACU70
ACC127
ACA87
ACG13
Ala A8.8%
GCU62
GCC185
GCA76
GCG12
Tyr Y3.0%
UAU50
UAC63
His H2.8%
CAU31
CAC77
Gln Q2.4%
CAA67
CAG25
Asn N3.1%
AAU50
AAC67
Lys K2.1%
AAA64
AAG15
Asp D2.0%
GAU22
GAC56
Glu E2.7%
GAA76
GAG25
Cys C0.7%
UGU8
UGC17
Trp W3.1%
UGA92
UGG26
Arg R2.0%
CGU10
CGC14
CGA39
CGG13
Gly G6.4%
GGU30
GGC91
GGA70
GGG52
Stop 0.3%
UAA8
UAG1
AGA1
AGG0
Genome map
38 annotated features in NC_003161.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,014 | 946 bp | + | 47.9% |
| tRNA-Val | Transfer RNA | 1,015 | 1,086 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,748 | 1,662 bp | + | 45.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,749 | 2,822 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,823 | 3,797 | 975 bp | + | 48.5% |
| tRNA-Ile | Transfer RNA | 3,802 | 3,873 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,873 | 3,943 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,943 | 4,012 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,013 | 5,059 | 1,047 bp | + | 47.6% |
| tRNA-Trp | Transfer RNA | 5,059 | 5,129 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,130 | 5,198 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,201 | 5,273 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,306 | 5,371 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,376 | 5,445 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,447 | 6,997 | 1,551 bp | + | 45.8% |
| tRNA-Ser (UCN) | Transfer RNA | 6,998 | 7,068 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,072 | 7,142 | 71 bp | + | – |
| COX2 | Protein-coding gene | 7,156 | 7,846 | 691 bp | + | 43.9% |
| tRNA-Lys | Transfer RNA | 7,847 | 7,918 | 72 bp | + | – |
| ATP8 | Protein-coding gene | 7,920 | 8,087 | 168 bp | + | 42.3% |
| ATP6 | Protein-coding gene | 8,078 | 8,761 | 684 bp | + | 44.6% |
| COX3 | Protein-coding gene | 8,761 | 9,546 | 786 bp | + | 47.6% |
| tRNA-Gly | Transfer RNA | 9,546 | 9,616 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,617 | 9,967 | 351 bp | + | 48.2% |
| tRNA-Arg | Transfer RNA | 9,966 | 10,034 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,035 | 10,331 | 297 bp | + | 53.2% |
| ND4 | Protein-coding gene | 10,325 | 11,705 | 1,381 bp | + | 47.3% |
| tRNA-His | Transfer RNA | 11,706 | 11,774 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,775 | 11,843 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,845 | 11,917 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,918 | 13,756 | 1,839 bp | + | 46.7% |
| ND6 | Protein-coding gene | 13,752 | 14,273 | 522 bp | − | 49.6% |
| tRNA-Glu | Transfer RNA | 14,275 | 14,343 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,348 | 15,488 | 1,141 bp | + | 44.6% |
| tRNA-Thr | Transfer RNA | 15,489 | 15,560 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,560 | 15,629 | 70 bp | − | – |
| D-loop | Control region | 15,630 | 16,061 | 432 bp | – | 40.5% |