order · mtDNA statistics

Soricomorpha

4 species in 2 families. Every region of their mitochondrial genomes, side by side.

Group

species

36.1%

mean GC, whole genome

SD 1.3, range 34.3–37.4%

17,221

median genome length, bp

Range 16,814–17,260 bp

families

Regions

GC content of each region across Soricomorpha, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	4	36.12%	1.30	0.036	34.32%Suncus murinus	36.39%	37.38%Crocidura russula	–	–
Protein-coding	4	36.09%	1.43	0.040	34.04%Suncus murinus	36.47%	37.37%Crocidura russula	–	–
All rRNA	4	36.90%	1.05	0.029	35.34%Suncus murinus	37.31%	37.64%Mogera wogura	–	–
All tRNA	4	35.60%	0.45	0.013	35.05%Suncus murinus	35.63%	36.11%Mogera wogura	–	–
12S rRNA	4	38.72%	1.00	0.026	37.23%Suncus murinus	39.17%	39.31%Mogera wogura	–	–
16S rRNA	4	36.06%	1.36	0.038	34.16%Suncus murinus	36.37%	37.34%Crocidura russula	–	–
D-loop	4	35.43%	2.09	0.059	33.67%Neomys fodiens	34.90%	38.26%Crocidura russula	–	–
ND1	4	36.50%	2.18	0.060	34.14%Neomys fodiens	36.49%	38.87%Crocidura russula	–	–
ND2	4	32.34%	2.02	0.063	30.56%Suncus murinus	31.78%	35.25%Crocidura russula	–	–
COX1	4	38.01%	1.63	0.043	35.60%Suncus murinus	38.71%	39.03%Neomys fodiens	–	–
COX2	4	35.16%	1.74	0.049	33.19%Suncus murinus	35.38%	36.70%Neomys fodiens	–	–
ATP8	4	31.00%	2.51	0.081	28.43%Suncus murinus	30.88%	33.82%Mogera wogura	–	–
ATP6	4	35.83%	2.02	0.056	33.04%Suncus murinus	36.20%	37.89%Neomys fodiens	–	–
COX3	4	39.57%	1.25	0.032	37.76%Suncus murinus	39.99%	40.56%Neomys fodiens	–	–
ND3	4	35.34%	2.38	0.067	32.28%Suncus murinus	35.72%	37.64%Neomys fodiens	–	–
ND4L	4	33.75%	1.85	0.055	31.99%Suncus murinus	33.84%	35.35%Crocidura russula	–	–
ND4	4	34.71%	2.39	0.069	32.51%Suncus murinus	34.14%	38.03%Crocidura russula	–	–
ND5	4	35.68%	1.65	0.046	33.28%Suncus murinus	36.24%	36.96%Mogera wogura	–	–
ND6	4	34.18%	1.45	0.043	32.21%Suncus murinus	34.45%	35.61%Mogera wogura	–	–
CYTB	4	39.72%	1.26	0.032	38.60%Suncus murinus	39.43%	41.42%Crocidura russula	–	–

Families of Soricomorpha

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Families of Soricomorpha

Soricidae	3	35.95%	1.54	0.043	34.32%Suncus murinus	36.16%	37.38%Crocidura russula	–	–
Talpidae	1	36.62%	–	–	36.62%Mogera wogura	36.62%	36.62%Mogera wogura	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Soricomorpha

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Soricomorpha taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.