MitoAge

Mogera wogura

Japanese mole

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Maximum lifespan
3.2 yr
AnAge record
mtDNA size
16,814 bp
RefSeq NC_005035.1
GC content
36.62%
Whole genome
Non-coding
1,400 bp
D-loop 1,332 bp

Where Japanese mole sits among 2,335 species

Whole-genome GC content against maximum lifespan. Japanese mole has the 2,169th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Japanese mole
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,814 bp
GC skew (G − C) / (G + C)
−0.288
AT skew (A − T) / (A + T)
+0.104

Life history

Maximum lifespan
3.2 years
Adult weight
97 g
Gestation or incubation
40 days
Litter or clutch size
3.8
Litters per year
1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03238)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,814 bp
Protein-coding11,341 bp
12S rRNA982 bp
16S rRNA1,579 bp
All tRNA1,515 bp
D-loop1,332 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1957 bp33.9%28.4%11.9%25.8%37.72%−0.368+0.087
ND2NADH dehydrogenase subunit 21,044 bp39.5%28.6%8.5%23.4%31.90%−0.465+0.159
COX1Cytochrome c oxidase subunit I1,545 bp30.2%30.9%15.8%23.2%38.96%−0.189−0.012
COX2Cytochrome c oxidase subunit II684 bp36.3%29.5%12.9%21.3%34.21%−0.248+0.102
ATP8ATP synthase F0 subunit 8204 bp40.7%25.5%5.9%27.9%33.82%−0.652+0.230
ATP6ATP synthase F0 subunit 6681 bp32.7%31.0%10.7%25.6%36.27%−0.409+0.028
COX3Cytochrome c oxidase subunit III784 bp30.0%29.8%15.1%25.1%40.18%−0.251+0.002
ND3NADH dehydrogenase subunit 3346 bp35.0%28.3%12.1%24.6%36.71%−0.339+0.105
ND4LNADH dehydrogenase subunit 4L297 bp30.6%37.0%10.4%21.9%32.32%−0.354−0.095
ND4NADH dehydrogenase subunit 41,378 bp35.3%30.0%10.2%24.5%34.69%−0.410+0.082
ND5NADH dehydrogenase subunit 51,821 bp34.8%28.2%11.0%25.9%36.96%−0.403+0.105
ND6NADH dehydrogenase subunit 6528 bp42.2%22.2%7.4%28.2%35.61%−0.585+0.312
CYTBCytochrome b1,140 bp31.1%29.9%13.9%25.1%38.95%−0.288+0.020
12S rRNA12S ribosomal RNA982 bp36.8%23.9%17.9%21.4%39.31%−0.088+0.211
16S rRNA16S ribosomal RNA1,579 bp38.5%24.9%17.2%19.4%36.61%−0.062+0.215
D-loopControl region (D-loop)1,332 bp36.3%28.0%11.7%24.0%35.74%−0.345+0.129

Codon usage

Counts per codon, darker is more frequent

3,802 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%
UUU132
UUC103
Leu L16.2%
UUA186
UUG15
CUU66
CUC53
CUA267
CUG28
Ile I8.7%
AUU208
AUC124
Met M6.2%
AUA210
AUG27
Val V4.8%
GUU37
GUC19
GUA113
GUG13
Ser S7.5%
UCU42
UCC43
UCA137
UCG6
AGU21
AGC35
Pro P5.0%
CCU31
CCC21
CCA131
CCG6
Thr T8.2%
ACU53
ACC73
ACA176
ACG11
Ala A6.7%
GCU55
GCC83
GCA115
GCG2
Tyr Y3.5%
UAU79
UAC54
His H2.6%
CAU35
CAC64
Gln Q2.4%
CAA85
CAG5
Asn N4.2%
AAU64
AAC95
Lys K2.6%
AAA88
AAG9
Asp D1.8%
GAU27
GAC41
Glu E2.6%
GAA81
GAG16
Cys C0.6%
UGU9
UGC13
Trp W2.7%
UGA90
UGG13
Arg R1.7%
CGU8
CGC5
CGA51
CGG0
Gly G5.7%
GGU44
GGC40
GGA110
GGG24
Stop 0.3%
UAA8
UAG1
AGA1
AGG0

Genome map

38 annotated features in NC_005035.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (36.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17070 bp+–
12S rRNARibosomal RNA711,052982 bp+39.3%
tRNA-ValTransfer RNA1,0531,11967 bp+–
16S rRNARibosomal RNA1,1202,6981,579 bp+36.6%
tRNA-Leu (UUR)Transfer RNA2,6992,77375 bp+–
ND1Protein-coding gene2,7763,732957 bp+37.7%
tRNA-IleTransfer RNA3,7323,80069 bp+–
tRNA-GlnTransfer RNA3,7983,87073 bp−–
tRNA-MetTransfer RNA3,8723,94069 bp+–
ND2Protein-coding gene3,9414,9841,044 bp+31.9%
tRNA-TrpTransfer RNA4,9835,05068 bp+–
tRNA-AlaTransfer RNA5,0595,12769 bp−–
tRNA-AsnTransfer RNA5,1295,20173 bp−–
tRNA-CysTransfer RNA5,2395,30466 bp−–
tRNA-TyrTransfer RNA5,3055,37167 bp−–
COX1Protein-coding gene5,3736,9171,545 bp+39.0%
tRNA-Ser (UCN)Transfer RNA6,9196,98769 bp−–
tRNA-AspTransfer RNA6,9957,06369 bp+–
COX2Protein-coding gene7,0647,747684 bp+34.2%
tRNA-LysTransfer RNA7,7517,82070 bp+–
ATP8Protein-coding gene7,8228,025204 bp+33.8%
ATP6Protein-coding gene7,9838,663681 bp+36.3%
COX3Protein-coding gene8,6639,446784 bp+40.2%
tRNA-GlyTransfer RNA9,4479,51569 bp+–
ND3Protein-coding gene9,5169,861346 bp+36.7%
tRNA-ArgTransfer RNA9,8629,92968 bp+–
ND4LProtein-coding gene9,93010,226297 bp+32.3%
ND4Protein-coding gene10,22011,5971,378 bp+34.7%
tRNA-HisTransfer RNA11,59811,66669 bp+–
tRNA-Ser (AGY)Transfer RNA11,66711,72862 bp+–
tRNA-Leu (CUN)Transfer RNA11,73111,80070 bp+–
ND5Protein-coding gene11,80113,6211,821 bp+37.0%
ND6Protein-coding gene13,60514,132528 bp−35.6%
tRNA-GluTransfer RNA14,13314,20169 bp−–
CYTBProtein-coding gene14,20615,3451,140 bp+39.0%
tRNA-ThrTransfer RNA15,34615,41368 bp+–
tRNA-ProTransfer RNA15,41315,48270 bp−–
D-loopControl region15,48316,8141,332 bp–35.7%

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