MitoAge

Neomys fodiens

Eurasian water shrew

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Maximum lifespan
3.1 yr
AnAge record
mtDNA size
17,260 bp
RefSeq NC_025559.1
GC content
36.16%
Whole genome
Non-coding
1,872 bp
D-loop 1,809 bp

Where Eurasian water shrew sits among 2,335 species

Whole-genome GC content against maximum lifespan. Eurasian water shrew has the 2,174th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Eurasian water shrew
  • This species
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Plot other mtDNA features with this species highlighted

Base composition

Whole genome17,260 bp
GC skew (G − C) / (G + C)
−0.285
AT skew (A − T) / (A + T)
+0.033

Life history

Maximum lifespan
3.1 years
Adult weight
15 g
Birth weight
780 mg
Basal metabolic rate
0.328 W
Body temperature
37.3 °C
Female sexual maturity
106 days
Male sexual maturity
106 days
Gestation or incubation
20 days
Litter or clutch size
5
Litters per year
1.8

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03220)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome17,260 bp
Protein-coding11,348 bp
12S rRNA963 bp
16S rRNA1,569 bp
All tRNA1,513 bp
D-loop1,809 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp32.3%33.6%10.7%23.5%34.14%−0.374−0.021
ND2NADH dehydrogenase subunit 21,042 bp35.5%32.8%8.3%23.3%31.67%−0.473+0.039
COX1Cytochrome c oxidase subunit I1,545 bp27.4%33.6%16.2%22.8%39.03%−0.168−0.102
COX2Cytochrome c oxidase subunit II684 bp34.5%28.8%13.7%23.0%36.70%−0.251+0.090
ATP8ATP synthase F0 subunit 8204 bp38.7%31.9%6.9%22.5%29.41%−0.533+0.097
ATP6ATP synthase F0 subunit 6681 bp31.0%31.1%10.7%27.2%37.89%−0.434−0.002
COX3Cytochrome c oxidase subunit III784 bp27.8%31.6%15.3%25.3%40.56%−0.245−0.064
ND3NADH dehydrogenase subunit 3348 bp30.7%31.6%12.6%25.0%37.64%−0.328−0.014
ND4LNADH dehydrogenase subunit 4L297 bp29.0%35.7%13.8%21.5%35.35%−0.219−0.104
ND4NADH dehydrogenase subunit 41,378 bp34.5%31.9%9.9%23.7%33.60%−0.408+0.038
ND5NADH dehydrogenase subunit 51,821 bp30.6%32.9%10.8%25.7%36.52%−0.408−0.036
ND6NADH dehydrogenase subunit 6537 bp39.5%25.7%8.4%26.4%34.82%−0.519+0.211
CYTBCytochrome b1,140 bp29.4%30.7%13.2%26.7%39.91%−0.336−0.022
12S rRNA12S ribosomal RNA963 bp36.1%24.7%18.5%20.7%39.15%−0.056+0.188
16S rRNA16S ribosomal RNA1,569 bp37.8%26.1%16.4%19.7%36.14%−0.090+0.184
D-loopControl region (D-loop)1,809 bp33.3%33.1%11.5%22.2%33.67%−0.317+0.003

Codon usage

Counts per codon, darker is more frequent

3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%
UUU122
UUC114
Leu L16.0%
UUA193
UUG23
CUU105
CUC75
CUA197
CUG16
Ile I9.0%
AUU225
AUC117
Met M6.0%
AUA191
AUG36
Val V5.2%
GUU55
GUC35
GUA90
GUG18
Ser S7.4%
UCU63
UCC44
UCA112
UCG12
AGU21
AGC31
Pro P5.0%
CCU59
CCC51
CCA80
CCG2
Thr T8.0%
ACU86
ACC78
ACA134
ACG8
Ala A6.6%
GCU75
GCC76
GCA97
GCG2
Tyr Y3.9%
UAU99
UAC49
His H2.4%
CAU43
CAC47
Gln Q2.4%
CAA83
CAG8
Asn N4.3%
AAU80
AAC83
Lys K2.5%
AAA90
AAG4
Asp D1.7%
GAU34
GAC30
Glu E2.6%
GAA87
GAG13
Cys C0.6%
UGU11
UGC11
Trp W2.7%
UGA96
UGG8
Arg R1.7%
CGU9
CGC10
CGA43
CGG2
Gly G5.6%
GGU53
GGC39
GGA98
GGG22
Stop 0.2%
UAA8
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_025559.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (36.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,031963 bp+39.2%
tRNA-ValTransfer RNA1,0321,10170 bp+–
16S rRNARibosomal RNA1,1002,6681,569 bp+36.1%
tRNA-Leu (UUR)Transfer RNA2,6692,74375 bp+–
ND1Protein-coding gene2,7463,700955 bp+34.1%
tRNA-IleTransfer RNA3,7013,76969 bp+–
tRNA-GlnTransfer RNA3,7673,83973 bp−–
tRNA-MetTransfer RNA3,8393,90769 bp+–
ND2Protein-coding gene3,9084,9491,042 bp+31.7%
tRNA-TrpTransfer RNA4,9505,01869 bp+–
tRNA-AlaTransfer RNA5,0235,09169 bp−–
tRNA-AsnTransfer RNA5,0955,16773 bp−–
tRNA-CysTransfer RNA5,2075,27266 bp−–
tRNA-TyrTransfer RNA5,2745,34067 bp−–
COX1Protein-coding gene5,3426,8861,545 bp+39.0%
tRNA-Ser (UCN)Transfer RNA6,8846,95269 bp−–
tRNA-AspTransfer RNA6,9597,02668 bp+–
COX2Protein-coding gene7,0277,710684 bp+36.7%
tRNA-LysTransfer RNA7,7147,78370 bp+–
ATP8Protein-coding gene7,7847,987204 bp+29.4%
ATP6Protein-coding gene7,9458,625681 bp+37.9%
COX3Protein-coding gene8,6259,408784 bp+40.6%
tRNA-GlyTransfer RNA9,4099,47971 bp+–
ND3Protein-coding gene9,4809,827348 bp+37.6%
tRNA-ArgTransfer RNA9,8299,89668 bp+–
ND4LProtein-coding gene9,89710,193297 bp+35.4%
ND4Protein-coding gene10,18711,5641,378 bp+33.6%
tRNA-HisTransfer RNA11,56511,63369 bp+–
tRNA-Ser (AGY)Transfer RNA11,63411,69259 bp+–
tRNA-Leu (CUN)Transfer RNA11,69411,76370 bp+–
ND5Protein-coding gene11,76413,5841,821 bp+36.5%
ND6Protein-coding gene13,56814,104537 bp−34.8%
tRNA-GluTransfer RNA14,10514,17369 bp+–
CYTBProtein-coding gene14,17615,3151,140 bp+39.9%
tRNA-ThrTransfer RNA15,31615,38368 bp+–
tRNA-ProTransfer RNA15,38415,45168 bp−–
D-loopControl region15,45217,2601,809 bp–33.7%

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