order · mtDNA statistics

Suliformes

6 species in 4 families. Every region of their mitochondrial genomes, side by side.

Group

species

45.5%

mean GC, whole genome

SD 0.7, range 44.7–46.6%

17,413

median genome length, bp

Range 16,646–19,042 bp

families

Regions

GC content of each region across Suliformes, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	6	45.47%	0.71	0.016	44.73%Fregata magnificens	45.37%	46.55%Anhinga melanogaster	−0.63	0.18
Protein-coding	6	46.36%	0.83	0.018	45.19%Fregata magnificens	46.38%	47.55%Anhinga melanogaster	−0.74	0.09
All rRNA	6	47.47%	1.53	0.032	45.64%Sula dactylatra	47.78%	48.84%Phalacrocorax carbo	−0.30	0.56
All tRNA	6	43.09%	0.72	0.017	41.96%Sula dactylatra	43.19%	44.06%Anhinga melanogaster	−0.42	0.4
12S rRNA	6	50.01%	1.95	0.039	47.65%Sula dactylatra	50.28%	51.98%Phalacrocorax carbo	−0.24	0.65
16S rRNA	6	45.90%	1.32	0.029	44.42%Sula dactylatra	45.89%	47.46%Phalacrocorax brasilianus	−0.36	0.48
D-loop	5	37.97%	2.85	0.075	35.27%Phalacrocorax auritus	37.33%	41.61%Anhinga melanogaster	−0.35	0.56
ND1	6	46.57%	1.29	0.028	45.30%Fregata magnificens	46.32%	48.72%Anhinga melanogaster	−0.76	0.08
ND2	6	44.37%	1.79	0.040	41.98%Sula dactylatra	44.30%	46.69%Anhinga melanogaster	−0.70	0.12
COX1	6	47.31%	0.53	0.011	46.29%Sula dactylatra	47.42%	47.71%Phalacrocorax brasilianus	−0.32	0.54
COX2	6	45.15%	0.64	0.014	44.15%Fregata magnificens	45.39%	45.76%Anhinga melanogaster	−0.10	0.85
ATP8	6	41.87%	1.39	0.033	40.48%Phalacrocorax carbo	41.67%	44.05%Sula dactylatra	0.29	0.58
ATP6	6	45.98%	1.56	0.034	44.01%Fregata magnificens	46.27%	48.24%Anhinga melanogaster	−0.63	0.18
COX3	6	47.19%	0.85	0.018	46.05%Fregata magnificens	47.13%	48.09%Phalacrocorax carbo	−0.16	0.76
ND3	6	45.04%	1.31	0.029	43.18%Phalacrocorax carbo	45.30%	46.72%Anhinga melanogaster	−0.40	0.43
ND4L	6	46.46%	2.19	0.047	42.76%Fregata magnificens	47.14%	48.82%Phalacrocorax auritus	−0.61	0.2
ND4	6	45.80%	1.15	0.025	43.69%Fregata magnificens	46.08%	46.81%Phalacrocorax auritus	−0.66	0.16
ND5	6	46.23%	1.01	0.022	44.77%Fregata magnificens	46.42%	47.19%Phalacrocorax brasilianus	−0.84	0.03
ND6	6	49.46%	2.44	0.049	47.60%Phalacrocorax auritus	48.42%	54.02%Anhinga melanogaster	−0.28	0.59
CYTB	6	46.98%	1.21	0.026	45.93%Phalacrocorax carbo	46.54%	48.56%Anhinga melanogaster	−0.19	0.72

Families of Suliformes

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Families of Suliformes

Phalacrocoracidae	3	45.58%	0.40	0.009	45.21%Phalacrocorax carbo	45.52%	46.01%Phalacrocorax auritus	–	–
Fregatidae	1	44.73%	–	–	44.73%Fregata magnificens	44.73%	44.73%Fregata magnificens	–	–
Sulidae	1	44.78%	–	–	44.78%Sula dactylatra	44.78%	44.78%Sula dactylatra	–	–
Anhingidae	1	46.55%	–	–	46.55%Anhinga melanogaster	46.55%	46.55%Anhinga melanogaster	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Suliformes

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Suliformes taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.