family · mtDNA statistics

Anguillidae

10 species in 1 genus. Every region of their mitochondrial genomes, side by side.

Group

species

41.1%

mean GC, whole genome

SD 0.2, range 40.9–41.5%

16,692

median genome length, bp

Range 16,678–16,833 bp

genus

Regions

GC content of each region across Anguillidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	10	41.11%	0.18	0.004	40.93%Anguilla rostrata	41.11%	41.54%Anguilla reinhardtii	0.11	0.76
Protein-coding	10	41.17%	0.18	0.004	40.87%Anguilla rostrata	41.12%	41.50%Anguilla reinhardtii	−0.30	0.4
All rRNA	10	43.68%	0.22	0.005	43.34%Anguilla dieffenbachii	43.72%	43.93%Anguilla bicolor	0.32	0.36
All tRNA	10	42.94%	0.31	0.007	42.45%Anguilla bicolor	42.96%	43.44%Anguilla australis	0.48	0.16
12S rRNA	10	46.36%	0.23	0.005	46.00%Anguilla mossambica	46.41%	46.67%Anguilla australis	0.01	0.98
16S rRNA	10	42.20%	0.36	0.009	41.55%Anguilla dieffenbachii	42.24%	42.56%Anguilla anguilla	0.31	0.39
D-loop	10	30.33%	1.53	0.050	27.28%Anguilla labiata	30.08%	32.68%Anguilla reinhardtii	0.28	0.43
ND1	10	42.52%	0.75	0.018	41.05%Anguilla dieffenbachii	42.70%	43.31%Anguilla nebulosa	−0.62	0.06
ND2	10	39.02%	0.32	0.008	38.56%Anguilla labiata	39.04%	39.52%Anguilla mossambica	0.57	0.09
COX1	10	42.76%	0.27	0.006	42.37%Anguilla marmorata	42.69%	43.31%Anguilla reinhardtii	0.29	0.42
COX2	10	42.27%	0.51	0.012	41.39%Anguilla mossambica	42.55%	42.69%Anguilla australis	−0.05	0.9
ATP8	10	40.89%	1.05	0.026	39.29%Anguilla marmorata	41.07%	42.86%Anguilla rostrata	0.58	0.08
ATP6	10	39.59%	0.99	0.025	37.92%Anguilla bicolor	39.68%	41.00%Anguilla labiata	−0.33	0.35
COX3	10	43.21%	0.42	0.010	42.42%Anguilla mossambica	43.31%	43.95%Anguilla dieffenbachii	0.36	0.31
ND3	10	42.15%	0.71	0.017	40.97%Anguilla bicolor	41.83%	43.55%Anguilla rostrata	0.56	0.1
ND4L	10	44.61%	1.29	0.029	42.42%Anguilla reinhardtii	45.29%	46.13%Anguilla marmorata	−0.05	0.89
ND4	10	40.63%	0.40	0.010	39.97%Anguilla rostrata	40.73%	41.20%Anguilla nebulosa	−0.70	0.02
ND5	10	39.03%	0.45	0.012	38.17%Anguilla rostrata	39.14%	39.85%Anguilla bicolor	−0.61	0.06
ND6	10	39.75%	0.60	0.015	39.08%Anguilla bicolor	39.46%	40.80%Anguilla dieffenbachii	0.04	0.92
CYTB	10	41.83%	0.59	0.014	41.23%Anguilla bicolor	41.62%	42.72%Anguilla australis	0.53	0.11

Genera of Anguillidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Anguillidae

Anguilla	10	41.11%	0.18	0.004	40.93%Anguilla rostrata	41.11%	41.54%Anguilla reinhardtii	0.11	0.76

Codon usage

Share of each codon in all 13 protein-coding genes, across Anguillidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Anguillidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.