Anguilla bicolor
Indonesian shortfin eel
GC content
41.14%
Whole genome
Non-coding
1,048 bp
D-loop 978 bp
Where Indonesian shortfin eel sits among 2,335 species
Whole-genome GC content against maximum lifespan. Indonesian shortfin eel has the 890th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,700 bp
- GC skew (G − C) / (G + C)
- −0.254
- AT skew (A − T) / (A + T)
- +0.159
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,700 bp
Protein-coding11,447 bp
12S rRNA948 bp
16S rRNA1,704 bp
All tRNA1,562 bp
D-loop978 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 972 bp | 42.49% | −0.361 | +0.113 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 38.66% | −0.396 | +0.270 | |||||
| COX1Cytochrome c oxidase subunit I | 1,593 bp | 42.94% | −0.173 | +0.001 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.97% | −0.207 | +0.127 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 41.07% | −0.304 | +0.152 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 37.92% | −0.367 | +0.024 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 43.06% | −0.254 | +0.069 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 40.97% | −0.343 | −0.029 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.46% | −0.452 | +0.037 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 40.70% | −0.335 | +0.128 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,842 bp | 39.85% | −0.343 | +0.170 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 39.08% | −0.500 | +0.535 | |||||
| CYTBCytochrome b | 1,140 bp | 41.23% | −0.319 | +0.066 | |||||
| 12S rRNA12S ribosomal RNA | 948 bp | 46.52% | −0.093 | +0.278 | |||||
| 16S rRNA16S ribosomal RNA | 1,704 bp | 42.49% | −0.088 | +0.349 | |||||
| D-loopControl region (D-loop) | 978 bp | 32.00% | −0.214 | +0.167 |
Codon usage
Counts per codon, darker is more frequent3,820 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU95
UUC134
Leu L15.6%
UUA103
UUG19
CUU82
CUC62
CUA291
CUG40
Ile I7.4%
AUU158
AUC126
Met M5.5%
AUA163
AUG46
Val V6.0%
GUU43
GUC37
GUA131
GUG20
Ser S5.7%
UCU28
UCC41
UCA103
UCG6
AGU7
AGC34
Pro P5.6%
CCU27
CCC28
CCA153
CCG7
Thr T8.0%
ACU44
ACC85
ACA173
ACG4
Ala A8.2%
GCU57
GCC126
GCA123
GCG7
Tyr Y3.2%
UAU59
UAC64
His H2.6%
CAU37
CAC61
Gln Q2.6%
CAA95
CAG5
Asn N3.5%
AAU37
AAC96
Lys K2.5%
AAA92
AAG2
Asp D2.2%
GAU26
GAC57
Glu E2.7%
GAA95
GAG9
Cys C0.8%
UGU14
UGC16
Trp W3.2%
UGA108
UGG13
Arg R2.0%
CGU12
CGC6
CGA56
CGG3
Gly G6.5%
GGU35
GGC46
GGA135
GGG31
Stop 0.2%
UAA5
UAG1
AGA0
AGG1
Genome map
38 annotated features in NC_006534.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (41.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,017 | 948 bp | + | 46.5% |
| tRNA-Val | Transfer RNA | 1,018 | 1,088 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,089 | 2,792 | 1,704 bp | + | 42.5% |
| tRNA-Leu (UUR) | Transfer RNA | 2,793 | 2,868 | 76 bp | + | – |
| ND1 | Protein-coding gene | 2,869 | 3,840 | 972 bp | + | 42.5% |
| tRNA-Ile | Transfer RNA | 3,843 | 3,914 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,914 | 3,984 | 71 bp | + | – |
| tRNA-Met | Transfer RNA | 3,984 | 4,052 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,053 | 5,097 | 1,045 bp | + | 38.7% |
| tRNA-Trp | Transfer RNA | 5,098 | 5,169 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,171 | 5,239 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,241 | 5,313 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,356 | 5,421 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,422 | 5,492 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,494 | 7,086 | 1,593 bp | + | 42.9% |
| tRNA-Ser (UCN) | Transfer RNA | 7,078 | 7,148 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,154 | 7,223 | 70 bp | + | – |
| COX2 | Protein-coding gene | 7,230 | 7,920 | 691 bp | + | 42.0% |
| tRNA-Lys | Transfer RNA | 7,921 | 7,996 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,998 | 8,165 | 168 bp | + | 41.1% |
| ATP6 | Protein-coding gene | 8,156 | 8,838 | 683 bp | + | 37.9% |
| COX3 | Protein-coding gene | 8,839 | 9,623 | 785 bp | + | 43.1% |
| tRNA-Gly | Transfer RNA | 9,624 | 9,695 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,696 | 10,044 | 349 bp | + | 41.0% |
| tRNA-Arg | Transfer RNA | 10,045 | 10,115 | 71 bp | + | – |
| ND4L | Protein-coding gene | 10,116 | 10,412 | 297 bp | + | 45.5% |
| ND4 | Protein-coding gene | 10,406 | 11,786 | 1,381 bp | + | 40.7% |
| tRNA-His | Transfer RNA | 11,787 | 11,855 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,856 | 11,926 | 71 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,927 | 11,999 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,000 | 13,841 | 1,842 bp | + | 39.9% |
| ND6 | Protein-coding gene | 13,838 | 14,359 | 522 bp | − | 39.1% |
| tRNA-Glu | Transfer RNA | 14,360 | 14,428 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,434 | 15,573 | 1,140 bp | + | 41.2% |
| tRNA-Thr | Transfer RNA | 15,574 | 15,646 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,653 | 15,722 | 70 bp | − | – |
| D-loop | Control region | 15,723 | 16,700 | 978 bp | – | 32.0% |