family · mtDNA statistics

Embiotocidae

4 species in 3 genera. Every region of their mitochondrial genomes, side by side.

Group

species

43.9%

mean GC, whole genome

SD 0.3, range 43.6–44.2%

16,529

median genome length, bp

Range 16,515–16,536 bp

genera

Regions

GC content of each region across Embiotocidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	4	43.93%	0.26	0.006	43.62%Phanerodon furcatus	43.94%	44.24%Embiotoca jacksoni	–	–
Protein-coding	4	44.17%	0.31	0.007	43.74%Phanerodon furcatus	44.25%	44.46%Embiotoca jacksoni	–	–
All rRNA	4	45.72%	0.60	0.013	44.87%Cymatogaster aggregata	45.91%	46.19%Embiotoca jacksoni	–	–
All tRNA	4	43.68%	0.40	0.009	43.12%Phanerodon furcatus	43.80%	44.00%Embiotoca jacksoni	–	–
12S rRNA	4	47.97%	0.65	0.014	47.04%Cymatogaster aggregata	48.15%	48.52%Embiotoca jacksoni	–	–
16S rRNA	4	44.46%	0.62	0.014	43.65%Cymatogaster aggregata	44.59%	45.01%Embiotoca lateralis	–	–
D-loop	4	35.62%	0.45	0.013	35.12%Cymatogaster aggregata	35.67%	36.00%Embiotoca jacksoni	–	–
ND1	4	42.69%	0.90	0.021	41.74%Phanerodon furcatus	42.56%	43.90%Embiotoca jacksoni	–	–
ND2	4	45.70%	0.80	0.017	44.74%Phanerodon furcatus	45.70%	46.65%Embiotoca jacksoni	–	–
COX1	4	44.82%	0.95	0.021	43.92%Phanerodon furcatus	44.61%	46.12%Cymatogaster aggregata	–	–
COX2	4	43.02%	1.20	0.028	41.53%Embiotoca jacksoni	43.05%	44.43%Phanerodon furcatus	–	–
ATP8	4	38.86%	1.95	0.050	37.50%Phanerodon furcatus	38.13%	41.67%Cymatogaster aggregata	–	–
ATP6	4	44.07%	0.49	0.011	43.42%Phanerodon furcatus	44.14%	44.59%Embiotoca lateralis	–	–
COX3	4	46.02%	0.26	0.006	45.73%Cymatogaster aggregata	45.99%	46.37%Embiotoca jacksoni	–	–
ND3	4	46.35%	0.95	0.020	45.27%Phanerodon furcatus	46.42%	47.28%Embiotoca jacksoni	–	–
ND4L	4	46.80%	0.87	0.019	45.79%Embiotoca lateralis	46.80%	47.81%Embiotoca jacksoni	–	–
ND4	4	45.40%	0.48	0.011	44.75%Phanerodon furcatus	45.55%	45.76%Embiotoca jacksoni	–	–
ND5	4	41.90%	0.28	0.007	41.71%Cymatogaster aggregata	41.79%	42.31%Embiotoca lateralis	–	–
ND6	4	45.64%	1.09	0.024	44.44%Embiotoca lateralis	45.69%	46.74%Embiotoca jacksoni	–	–
CYTB	4	43.23%	0.75	0.017	42.42%Phanerodon furcatus	43.30%	43.91%Embiotoca lateralis	–	–

Genera of Embiotocidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Embiotocidae

Embiotoca	2	44.12%	0.17	0.004	44.00%Embiotoca lateralis	44.12%	44.24%Embiotoca jacksoni	–	–
Cymatogaster	1	43.88%	–	–	43.88%Cymatogaster aggregata	43.88%	43.88%Cymatogaster aggregata	–	–
Phanerodon	1	43.62%	–	–	43.62%Phanerodon furcatus	43.62%	43.62%Phanerodon furcatus	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Embiotocidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Embiotocidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.