Embiotoca jacksoni

Black perch

Maximum lifespan

10 yr

AnAge record

mtDNA size

16,515 bp

RefSeq NC_029362.1

GC content

44.25%

Whole genome

Non-coding

877 bp

D-loop 811 bp

Where Black perch sits among 2,335 species

Whole-genome GC content against maximum lifespan. Black perch has the 1,588th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,515 bp

GC skew (G − C) / (G + C): −0.255
AT skew (A − T) / (A + T): −0.008

Life history

Maximum lifespan: 10 years
Adult weight: 385 g

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 04163)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: New in build 2
In the database since: build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,515 bp

Protein-coding11,449 bp

12S rRNA948 bp

16S rRNA1,691 bp

All tRNA1,550 bp

D-loop811 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Embiotoca jacksoni genes

ND1NADH dehydrogenase subunit 1	975 bp	24.0%	32.1%	15.6%	28.3%	43.90%	−0.290	−0.144
ND2NADH dehydrogenase subunit 2	1,046 bp	25.3%	28.0%	12.4%	34.2%	46.65%	−0.467	−0.050
COX1Cytochrome c oxidase subunit I	1,596 bp	24.2%	31.0%	18.2%	26.6%	44.86%	−0.187	−0.123
COX2Cytochrome c oxidase subunit II	691 bp	27.6%	30.8%	16.2%	25.3%	41.53%	−0.220	−0.054
ATP8ATP synthase F0 subunit 8	165 bp	30.3%	32.1%	9.7%	27.9%	37.58%	−0.484	−0.029
ATP6ATP synthase F0 subunit 6	683 bp	24.5%	31.5%	13.0%	31.0%	44.07%	−0.409	−0.126
COX3Cytochrome c oxidase subunit III	785 bp	23.3%	30.3%	18.2%	28.2%	46.37%	−0.214	−0.131
ND3NADH dehydrogenase subunit 3	349 bp	20.9%	31.8%	15.8%	31.5%	47.28%	−0.333	−0.207
ND4LNADH dehydrogenase subunit 4L	297 bp	22.2%	30.0%	16.5%	31.3%	47.81%	−0.310	−0.148
ND4NADH dehydrogenase subunit 4	1,381 bp	25.5%	28.7%	15.1%	30.6%	45.76%	−0.339	−0.060
ND5NADH dehydrogenase subunit 5	1,839 bp	27.6%	30.7%	13.7%	28.0%	41.71%	−0.343	−0.054
ND6NADH dehydrogenase subunit 6	522 bp	37.9%	15.3%	13.8%	33.0%	46.74%	−0.410	+0.424
CYTBCytochrome b	1,141 bp	24.5%	31.6%	15.0%	28.8%	43.82%	−0.316	−0.126
12S rRNA12S ribosomal RNA	948 bp	31.1%	20.4%	22.5%	26.1%	48.52%	−0.074	+0.209
16S rRNA16S ribosomal RNA	1,691 bp	33.9%	21.2%	20.5%	24.4%	44.89%	−0.086	+0.232
D-loopControl region (D-loop)	811 bp	32.3%	31.7%	14.1%	21.9%	36.01%	−0.219	+0.010

Codon usage

Counts per codon, darker is more frequent

Gene

3,820 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%

UUU146

UUC95

Leu L17.1%

UUA107

UUG28

CUU189

CUC141

CUA148

CUG40

Ile I7.2%

AUU193

AUC83

Met M4.1%

AUA106

AUG52

Val V5.8%

GUU72

GUC48

GUA76

GUG27

Ser S6.7%

UCU63

UCC72

UCA56

UCG7

AGU20

AGC37

Pro P5.7%

CCU70

CCC93

CCA41

CCG12

Thr T7.7%

ACU70

ACC116

ACA96

ACG13

Ala A9.3%

GCU91

GCC144

GCA99

GCG21

Tyr Y2.9%

UAU51

UAC60

His H2.7%

CAU42

CAC63

Gln Q2.6%

CAA88

CAG12

Asn N3.0%

AAU58

AAC55

Lys K1.9%

AAA65

AAG9

Asp D2.0%

GAU27

GAC51

Glu E2.6%

GAA80

GAG19

Cys C0.6%

UGU7

UGC16

Trp W3.2%

UGA98

UGG23

Arg R2.0%

CGU13

CGC12

CGA45

CGG5

Gly G6.4%

GGU35

GGC91

GGA62

GGG55

Stop 0.2%

UAA5

UAG1

AGA0

AGG0

Genome map

38 annotated features in NC_029362.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (44.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Embiotoca jacksoni (NC_029362.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	69	69 bp	+	–
12S rRNA	Ribosomal RNA	70	1,017	948 bp	+	48.5%
tRNA-Val	Transfer RNA	1,018	1,089	72 bp	+	–
16S rRNA	Ribosomal RNA	1,090	2,780	1,691 bp	+	44.9%
tRNA-Leu (UUR)	Transfer RNA	2,781	2,854	74 bp	+	–
ND1	Protein-coding gene	2,855	3,829	975 bp	+	43.9%
tRNA-Ile	Transfer RNA	3,834	3,903	70 bp	+	–
tRNA-Gln	Transfer RNA	3,903	3,973	71 bp	−	–
tRNA-Met	Transfer RNA	3,973	4,041	69 bp	+	–
ND2	Protein-coding gene	4,042	5,087	1,046 bp	+	46.7%
tRNA-Trp	Transfer RNA	5,088	5,159	72 bp	+	–
tRNA-Ala	Transfer RNA	5,161	5,229	69 bp	−	–
tRNA-Asn	Transfer RNA	5,232	5,304	73 bp	−	–
tRNA-Cys	Transfer RNA	5,339	5,404	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,405	5,472	68 bp	−	–
COX1	Protein-coding gene	5,474	7,069	1,596 bp	+	44.9%
tRNA-Ser (UCN)	Transfer RNA	7,070	7,140	71 bp	−	–
tRNA-Asp	Transfer RNA	7,144	7,216	73 bp	+	–
COX2	Protein-coding gene	7,225	7,915	691 bp	+	41.5%
tRNA-Lys	Transfer RNA	7,916	7,989	74 bp	+	–
ATP8	Protein-coding gene	7,991	8,155	165 bp	+	37.6%
ATP6	Protein-coding gene	8,146	8,828	683 bp	+	44.1%
COX3	Protein-coding gene	8,829	9,613	785 bp	+	46.4%
tRNA-Gly	Transfer RNA	9,614	9,683	70 bp	+	–
ND3	Protein-coding gene	9,684	10,032	349 bp	+	47.3%
tRNA-Arg	Transfer RNA	10,033	10,101	69 bp	+	–
ND4L	Protein-coding gene	10,102	10,398	297 bp	+	47.8%
ND4	Protein-coding gene	10,392	11,772	1,381 bp	+	45.8%
tRNA-His	Transfer RNA	11,773	11,841	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,842	11,909	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,916	11,988	73 bp	+	–
ND5	Protein-coding gene	11,989	13,827	1,839 bp	+	41.7%
ND6	Protein-coding gene	13,824	14,345	522 bp	−	46.7%
tRNA-Glu	Transfer RNA	14,346	14,414	69 bp	−	–
CYTB	Protein-coding gene	14,420	15,560	1,141 bp	+	43.8%
tRNA-Thr	Transfer RNA	15,561	15,633	73 bp	+	–
tRNA-Pro	Transfer RNA	15,635	15,704	70 bp	−	–
D-loop	Control region	15,705	16,515	811 bp	–	36.0%