family · mtDNA statistics

Gruidae

11 species in 5 genera. Every region of their mitochondrial genomes, side by side.

Group

species

44.5%

mean GC, whole genome

SD 0.2, range 44.4–44.9%

16,678

median genome length, bp

Range 16,541–16,802 bp

genera

Regions

GC content of each region across Gruidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	11	44.53%	0.16	0.004	44.36%Grus americana	44.49%	44.92%Balearica regulorum	−0.55	0.08
Protein-coding	11	45.05%	0.17	0.004	44.87%Antigone vipio	45.05%	45.49%Balearica regulorum	−0.62	0.04
All rRNA	11	45.72%	0.45	0.010	45.17%Grus monacha	45.62%	46.81%Balearica regulorum	−0.22	0.51
All tRNA	11	41.95%	0.38	0.009	41.64%Grus americana	41.81%	42.98%Balearica regulorum	−0.47	0.14
12S rRNA	11	48.32%	0.37	0.008	47.63%Antigone antigone	48.30%	48.97%Grus americana	−0.05	0.88
16S rRNA	11	44.14%	0.82	0.019	43.07%Grus monacha	44.07%	45.86%Balearica regulorum	−0.18	0.6
D-loop	11	40.70%	0.84	0.021	38.94%Balearica regulorum	40.87%	42.07%Grus japonensis	0.23	0.5
ND1	11	45.20%	0.60	0.013	44.20%Grus americana	45.13%	46.17%Balearica regulorum	−0.34	0.3
ND2	11	42.02%	0.58	0.014	41.29%Grus japonensis	41.87%	42.93%Balearica regulorum	0.36	0.28
COX1	11	46.09%	0.45	0.010	45.65%Leucogeranus leucogeranus	45.97%	47.00%Grus japonensis	−0.58	0.06
COX2	11	46.05%	0.54	0.012	45.47%Antigone vipio	45.76%	47.22%Leucogeranus leucogeranus	0.06	0.87
ATP8	11	43.03%	1.45	0.034	39.66%Antigone vipio	43.10%	45.40%Grus japonensis	−0.53	0.1
ATP6	11	43.90%	0.82	0.019	42.54%Anthropoides virgo	43.71%	45.47%Grus monacha	−0.32	0.35
COX3	11	47.01%	0.52	0.011	46.30%Leucogeranus leucogeranus	46.94%	47.96%Antigone antigone	0.28	0.41
ND3	11	44.44%	0.83	0.019	43.59%Grus americana	44.16%	45.87%Balearica regulorum	−0.19	0.58
ND4L	11	44.29%	0.92	0.021	43.10%Grus japonensis	44.11%	46.13%Balearica regulorum	0.15	0.66
ND4	11	44.40%	0.43	0.010	43.79%Antigone antigone	44.30%	45.32%Anthropoides virgo	−0.52	0.1
ND5	11	43.94%	0.36	0.008	43.47%Grus americana	43.91%	44.79%Grus japonensis	−0.47	0.14
ND6	11	47.46%	0.93	0.020	46.17%Antigone canadensis	47.32%	49.81%Leucogeranus leucogeranus	0.03	0.94
CYTB	11	46.77%	0.31	0.007	46.28%Antigone vipio	46.81%	47.33%Grus americana	−0.12	0.73

Genera of Gruidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Gruidae

Grus	4	44.47%	0.16	0.004	44.36%Grus americana	44.41%	44.70%Grus japonensis	–	–
Antigone	4	44.49%	0.04	0.001	44.44%Antigone vipio	44.50%	44.54%Antigone antigone	–	–
Anthropoides	1	44.58%	–	–	44.58%Anthropoides virgo	44.58%	44.58%Anthropoides virgo	–	–
Balearica	1	44.92%	–	–	44.92%Balearica regulorum	44.92%	44.92%Balearica regulorum	–	–
Leucogeranus	1	44.48%	–	–	44.48%Leucogeranus leucogeranus	44.48%	44.48%Leucogeranus leucogeranus	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Gruidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Gruidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.