MitoAge

Grus japonensis

Red-crowned crane

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Maximum lifespan
25.2 yr
AnAge record
mtDNA size
16,715 bp
RefSeq NC_020575.1
GC content
44.70%
Whole genome
Non-coding
1,250 bp
D-loop 1,167 bp

Where Red-crowned crane sits among 2,335 species

Whole-genome GC content against maximum lifespan. Red-crowned crane has the 618th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Red-crowned crane
  • This species
  • Other birds
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,715 bp
GC skew (G − C) / (G + C)
−0.393
AT skew (A − T) / (A + T)
+0.135

Life history

Maximum lifespan
25.2 years
Adult weight
8.5 kg
Female sexual maturity
3 years
Male sexual maturity
3 years
Gestation or incubation
31 days
Litter or clutch size
2
Postnatal growth rate
0.049 per day

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 00711)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Updated in build 2
In the database since
build 1 (2015-07-01)
Last changed
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,715 bp
Protein-coding11,360 bp
12S rRNA971 bp
16S rRNA1,595 bp
All tRNA1,550 bp
D-loop1,167 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1966 bp28.6%26.3%12.4%32.7%45.14%−0.450+0.042
ND2NADH dehydrogenase subunit 21,039 bp32.8%25.9%9.8%31.5%41.29%−0.524+0.118
COX1Cytochrome c oxidase subunit I1,551 bp28.0%25.0%16.1%30.9%47.00%−0.317+0.058
COX2Cytochrome c oxidase subunit II684 bp30.3%24.1%14.5%31.1%45.61%−0.365+0.113
ATP8ATP synthase F0 subunit 8174 bp31.6%23.0%6.9%38.5%45.40%−0.696+0.158
ATP6ATP synthase F0 subunit 6684 bp31.0%25.6%9.1%34.4%43.42%−0.582+0.096
COX3Cytochrome c oxidase subunit III784 bp27.9%25.5%15.4%31.1%46.56%−0.337+0.045
ND3NADH dehydrogenase subunit 3351 bp29.9%26.2%10.3%33.6%43.88%−0.532+0.066
ND4LNADH dehydrogenase subunit 4L297 bp31.6%25.3%12.1%31.0%43.10%−0.438+0.112
ND4NADH dehydrogenase subunit 41,368 bp32.5%23.3%9.5%34.7%44.23%−0.570+0.164
ND5NADH dehydrogenase subunit 51,815 bp32.7%22.5%10.9%33.9%44.79%−0.515+0.186
ND6NADH dehydrogenase subunit 6522 bp40.4%12.3%9.2%38.1%47.32%−0.611+0.535
CYTBCytochrome b1,143 bp27.6%25.4%12.6%34.4%46.98%−0.464+0.043
12S rRNA12S ribosomal RNA971 bp32.1%19.9%19.6%28.4%47.99%−0.185+0.236
16S rRNA16S ribosomal RNA1,595 bp33.9%21.4%18.6%26.1%44.70%−0.170+0.224
D-loopControl region (D-loop)1,167 bp30.4%27.5%14.2%27.8%42.07%−0.324+0.050

Codon usage

Counts per codon, darker is more frequent

3,792 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.7%
UUU54
UUC164
Leu L17.5%
UUA80
UUG26
CUU60
CUC159
CUA310
CUG27
Ile I8.1%
AUU84
AUC224
Met M4.6%
AUA143
AUG31
Val V4.1%
GUU29
GUC42
GUA70
GUG14
Ser S7.4%
UCU31
UCC90
UCA101
UCG5
AGU11
AGC42
Pro P5.9%
CCU28
CCC68
CCA119
CCG7
Thr T9.5%
ACU50
ACC156
ACA153
ACG3
Ala A7.3%
GCU61
GCC109
GCA100
GCG7
Tyr Y2.8%
UAU34
UAC74
His H3.0%
CAU27
CAC88
Gln Q2.6%
CAA86
CAG12
Asn N3.4%
AAU31
AAC97
Lys K2.2%
AAA84
AAG1
Asp D1.7%
GAU19
GAC45
Glu E2.6%
GAA85
GAG12
Cys C0.7%
UGU12
UGC15
Trp W2.8%
UGA96
UGG12
Arg R1.9%
CGU9
CGC19
CGA35
CGG8
Gly G5.9%
GGU24
GGC82
GGA77
GGG39
Stop 0.3%
UAA6
UAG2
AGA1
AGG2

Genome map

38 annotated features in NC_020575.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (44.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17373 bp+–
12S rRNARibosomal RNA741,044971 bp+48.0%
tRNA-ValTransfer RNA1,0451,11773 bp+–
16S rRNARibosomal RNA1,1182,7121,595 bp+44.7%
tRNA-Leu (UUR)Transfer RNA2,7132,78775 bp+–
ND1Protein-coding gene2,7923,757966 bp+45.1%
tRNA-IleTransfer RNA3,7563,82772 bp+–
tRNA-GlnTransfer RNA3,8363,90671 bp−–
tRNA-MetTransfer RNA3,9063,97469 bp+–
ND2Protein-coding gene3,9755,0131,039 bp+41.3%
tRNA-TrpTransfer RNA5,0145,08471 bp+–
tRNA-AlaTransfer RNA5,0865,15469 bp−–
tRNA-AsnTransfer RNA5,1575,22973 bp−–
tRNA-CysTransfer RNA5,2325,29867 bp−–
tRNA-TyrTransfer RNA5,2985,36871 bp−–
COX1Protein-coding gene5,3706,9201,551 bp+47.0%
tRNA-Ser (UCN)Transfer RNA6,9126,98574 bp−–
tRNA-AspTransfer RNA6,9887,05669 bp+–
COX2Protein-coding gene7,0587,741684 bp+45.6%
tRNA-LysTransfer RNA7,7437,81270 bp+–
ATP8Protein-coding gene7,8147,987174 bp+45.4%
ATP6Protein-coding gene7,9788,661684 bp+43.4%
COX3Protein-coding gene8,6619,444784 bp+46.6%
tRNA-GlyTransfer RNA9,4459,51369 bp+–
ND3Protein-coding gene9,5149,865352 bp+43.9%
tRNA-ArgTransfer RNA9,8689,93568 bp+–
ND4LProtein-coding gene9,93610,232297 bp+43.1%
ND4Protein-coding gene10,22611,5931,368 bp+44.2%
tRNA-HisTransfer RNA11,61211,68170 bp+–
tRNA-Ser (AGY)Transfer RNA11,68211,74867 bp+–
tRNA-Leu (CUN)Transfer RNA11,74811,81871 bp+–
ND5Protein-coding gene11,81913,6331,815 bp+44.8%
CYTBProtein-coding gene13,64314,7851,143 bp+47.0%
tRNA-ThrTransfer RNA14,79014,85970 bp+–
tRNA-ProTransfer RNA14,87714,94670 bp−–
ND6Protein-coding gene14,95315,474522 bp−47.3%
tRNA-GluTransfer RNA15,47915,54971 bp−–
D-loopControl region15,54916,7151,167 bp–42.1%

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