family · mtDNA statistics

Phylloscopidae

3 species in 1 genus. Every region of their mitochondrial genomes, side by side.

Group

species

46.6%

mean GC, whole genome

SD 1.5, range 45.7–48.3%

16,934

median genome length, bp

Range 16,881–16,936 bp

genus

Regions

GC content of each region across Phylloscopidae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	3	46.58%	1.50	0.032	45.71%Phylloscopus collybita	45.72%	48.31%Phylloscopus borealis	–	–
Protein-coding	3	47.13%	1.86	0.039	45.95%Phylloscopus collybita	46.17%	49.28%Phylloscopus borealis	–	–
All rRNA	3	46.55%	0.41	0.009	46.29%Phylloscopus collybita	46.34%	47.03%Phylloscopus borealis	–	–
All tRNA	3	42.40%	0.93	0.022	41.85%Phylloscopus trochilus	41.88%	43.47%Phylloscopus borealis	–	–
12S rRNA	3	50.15%	0.74	0.015	49.54%Phylloscopus trochilus	49.95%	50.97%Phylloscopus borealis	–	–
16S rRNA	3	44.35%	0.27	0.006	44.06%Phylloscopus collybita	44.38%	44.59%Phylloscopus borealis	–	–
D-loop	3	46.13%	0.92	0.020	45.17%Phylloscopus trochilus	46.22%	47.00%Phylloscopus collybita	–	–
ND1	3	47.24%	2.28	0.048	45.40%Phylloscopus trochilus	46.52%	49.80%Phylloscopus borealis	–	–
ND2	3	45.64%	2.32	0.051	43.46%Phylloscopus collybita	45.38%	48.08%Phylloscopus borealis	–	–
COX1	3	48.53%	1.25	0.026	47.45%Phylloscopus collybita	48.23%	49.90%Phylloscopus borealis	–	–
COX2	3	47.51%	2.42	0.051	45.91%Phylloscopus collybita	46.35%	50.29%Phylloscopus borealis	–	–
ATP8	3	43.25%	1.24	0.029	42.26%Phylloscopus collybita	42.86%	44.64%Phylloscopus borealis	–	–
ATP6	3	46.73%	0.81	0.017	46.20%Phylloscopus collybita	46.35%	47.66%Phylloscopus borealis	–	–
COX3	3	50.43%	1.08	0.022	49.62%Phylloscopus collybita	50.00%	51.66%Phylloscopus borealis	–	–
ND3	3	46.06%	4.77	0.104	43.30%Phylloscopus trochilus	43.30%	51.57%Phylloscopus borealis	–	–
ND4L	3	48.04%	1.27	0.027	47.14%Phylloscopus collybita	47.47%	49.49%Phylloscopus borealis	–	–
ND4	3	46.13%	2.17	0.047	44.70%Phylloscopus trochilus	45.07%	48.62%Phylloscopus borealis	–	–
ND5	3	46.28%	2.08	0.045	44.94%Phylloscopus collybita	45.21%	48.68%Phylloscopus borealis	–	–
ND6	3	47.46%	1.64	0.035	45.86%Phylloscopus collybita	47.40%	49.13%Phylloscopus borealis	–	–
CYTB	3	47.10%	1.96	0.042	45.45%Phylloscopus trochilus	46.58%	49.26%Phylloscopus borealis	–	–

Genera of Phylloscopidae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Phylloscopidae

Phylloscopus	3	46.58%	1.50	0.032	45.71%Phylloscopus collybita	45.72%	48.31%Phylloscopus borealis	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Phylloscopidae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Phylloscopidae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.