family · mtDNA statistics

Viverridae

6 species in 6 genera. Every region of their mitochondrial genomes, side by side.

Group

species

37.7%

mean GC, whole genome

SD 1.5, range 35.8–39.3%

16,708

median genome length, bp

Range 16,506–16,871 bp

genera

Regions

GC content of each region across Viverridae, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	6	37.73%	1.47	0.039	35.80%Paradoxurus hermaphroditus	37.83%	39.29%Genetta genetta	−0.23	0.66
Protein-coding	6	37.38%	1.90	0.051	34.94%Paradoxurus hermaphroditus	37.27%	39.55%Civettictis civetta	−0.21	0.7
All rRNA	6	38.82%	0.81	0.021	37.36%Paradoxurus hermaphroditus	39.15%	39.49%Genetta genetta	−0.01	0.99
All tRNA	6	35.40%	0.83	0.024	34.37%Paradoxurus hermaphroditus	35.36%	36.38%Viverra zibetha	−0.57	0.23
12S rRNA	6	40.54%	0.58	0.014	39.59%Paradoxurus hermaphroditus	40.80%	41.06%Civettictis civetta	−0.00	1
16S rRNA	6	37.76%	0.98	0.026	36.00%Paradoxurus hermaphroditus	38.07%	38.73%Genetta genetta	−0.01	0.99
D-loop	6	41.52%	2.00	0.048	38.44%Arctictis binturong	41.73%	44.44%Paguma larvata	−0.17	0.75
ND1	6	39.49%	1.61	0.041	37.49%Paguma larvata	39.42%	41.36%Civettictis civetta	−0.17	0.75
ND2	6	34.93%	2.02	0.058	32.53%Paradoxurus hermaphroditus	34.69%	37.33%Genetta genetta	−0.29	0.57
COX1	6	38.22%	1.82	0.048	35.99%Paradoxurus hermaphroditus	38.22%	40.88%Civettictis civetta	−0.06	0.91
COX2	6	36.30%	2.31	0.064	33.48%Paradoxurus hermaphroditus	36.04%	39.15%Civettictis civetta	−0.19	0.72
ATP8	6	29.98%	1.50	0.050	27.94%Arctictis binturong	29.66%	32.35%Genetta genetta	−0.28	0.6
ATP6	6	36.25%	1.60	0.044	33.77%Paradoxurus hermaphroditus	36.42%	38.18%Civettictis civetta	−0.09	0.86
COX3	6	39.67%	1.70	0.043	37.76%Paradoxurus hermaphroditus	39.73%	41.71%Viverra zibetha	−0.53	0.28
ND3	6	36.56%	3.53	0.097	32.56%Paradoxurus hermaphroditus	35.98%	41.91%Genetta genetta	−0.31	0.55
ND4L	6	36.25%	3.35	0.092	31.99%Paradoxurus hermaphroditus	36.20%	40.40%Genetta genetta	−0.40	0.43
ND4	6	36.55%	1.93	0.053	33.74%Paradoxurus hermaphroditus	36.61%	38.68%Civettictis civetta	−0.17	0.74
ND5	6	36.77%	1.91	0.052	34.38%Arctictis binturong	36.93%	38.99%Civettictis civetta	−0.09	0.87
ND6	6	36.24%	1.77	0.049	33.71%Paradoxurus hermaphroditus	36.84%	38.07%Genetta genetta	−0.30	0.56
CYTB	6	40.48%	2.34	0.058	37.46%Paradoxurus hermaphroditus	40.22%	43.42%Civettictis civetta	−0.14	0.79

Genera of Viverridae

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Genera of Viverridae

Paguma	1	37.25%	–	–	37.25%Paguma larvata	37.25%	37.25%Paguma larvata	–	–
Paradoxurus	1	35.80%	–	–	35.80%Paradoxurus hermaphroditus	35.80%	35.80%Paradoxurus hermaphroditus	–	–
Viverra	1	38.41%	–	–	38.41%Viverra zibetha	38.41%	38.41%Viverra zibetha	–	–
Arctictis	1	36.42%	–	–	36.42%Arctictis binturong	36.42%	36.42%Arctictis binturong	–	–
Civettictis	1	39.24%	–	–	39.24%Civettictis civetta	39.24%	39.24%Civettictis civetta	–	–
Genetta	1	39.29%	–	–	39.29%Genetta genetta	39.29%	39.29%Genetta genetta	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Viverridae

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Viverridae taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.