MitoAge

Viverra zibetha

Large indian civet

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Maximum lifespan
21.7 yr
AnAge record
mtDNA size
16,796 bp
RefSeq NC_053976.1
GC content
38.41%
Whole genome
Non-coding
1,408 bp
D-loop 1,316 bp

Where Large indian civet sits among 2,335 species

Whole-genome GC content against maximum lifespan. Large indian civet has the 819th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Large indian civet
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,796 bp
GC skew (G − C) / (G + C)
−0.300
AT skew (A − T) / (A + T)
+0.071

Life history

Maximum lifespan
21.7 years
Adult weight
10 kg
Gestation or incubation
80 days
Litter or clutch size
3
Litters per year
2

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 02272)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,796 bp
Protein-coding11,337 bp
12S rRNA965 bp
16S rRNA1,577 bp
All tRNA1,512 bp
D-loop1,316 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp30.6%29.8%11.5%28.1%39.58%−0.418+0.012
ND2NADH dehydrogenase subunit 21,042 bp36.5%27.7%8.5%27.3%35.80%−0.523+0.136
COX1Cytochrome c oxidase subunit I1,545 bp26.9%33.8%17.1%22.2%39.29%−0.130−0.113
COX2Cytochrome c oxidase subunit II684 bp33.9%28.8%13.3%24.0%37.28%−0.286+0.082
ATP8ATP synthase F0 subunit 8204 bp41.7%28.9%7.4%22.1%29.41%−0.500+0.181
ATP6ATP synthase F0 subunit 6681 bp31.6%31.3%10.0%27.2%37.15%−0.462+0.005
COX3Cytochrome c oxidase subunit III784 bp28.3%30.0%14.4%27.3%41.71%−0.309−0.028
ND3NADH dehydrogenase subunit 3346 bp33.5%29.5%11.6%25.4%36.99%−0.375+0.064
ND4LNADH dehydrogenase subunit 4L297 bp29.3%32.3%13.1%25.3%38.38%−0.316−0.049
ND4NADH dehydrogenase subunit 41,378 bp32.8%29.7%11.0%26.6%37.52%−0.416+0.050
ND5NADH dehydrogenase subunit 51,821 bp32.5%30.5%10.3%26.6%36.96%−0.441+0.031
ND6NADH dehydrogenase subunit 6528 bp40.7%22.0%9.7%27.7%37.31%−0.482+0.299
CYTBCytochrome b1,140 bp28.9%29.7%13.0%28.3%41.32%−0.372−0.013
12S rRNA12S ribosomal RNA965 bp36.4%22.7%17.7%23.2%40.93%−0.134+0.232
16S rRNA16S ribosomal RNA1,577 bp37.5%24.5%17.6%20.3%37.92%−0.070+0.209
D-loopControl region (D-loop)1,316 bp32.3%26.1%15.0%26.4%41.52%−0.275+0.105

Codon usage

Counts per codon, darker is more frequent

3,800 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%
UUU108
UUC131
Leu L15.8%
UUA156
UUG14
CUU86
CUC85
CUA229
CUG31
Ile I9.2%
AUU194
AUC157
Met M6.2%
AUA198
AUG36
Val V4.7%
GUU29
GUC38
GUA97
GUG15
Ser S7.4%
UCU69
UCC49
UCA106
UCG7
AGU15
AGC37
Pro P5.2%
CCU63
CCC64
CCA68
CCG2
Thr T8.1%
ACU79
ACC76
ACA144
ACG7
Ala A6.7%
GCU76
GCC92
GCA81
GCG5
Tyr Y3.6%
UAU76
UAC62
His H2.4%
CAU39
CAC51
Gln Q2.4%
CAA85
CAG6
Asn N4.1%
AAU73
AAC83
Lys K2.6%
AAA91
AAG8
Asp D1.7%
GAU35
GAC29
Glu E2.7%
GAA79
GAG22
Cys C0.6%
UGU6
UGC17
Trp W2.7%
UGA100
UGG4
Arg R1.7%
CGU8
CGC9
CGA47
CGG1
Gly G5.7%
GGU40
GGC49
GGA101
GGG27
Stop 0.2%
UAA7
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_053976.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (38.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA17070 bp+–
12S rRNARibosomal RNA711,035965 bp+40.9%
tRNA-ValTransfer RNA1,0361,10368 bp+–
16S rRNARibosomal RNA1,1042,6801,577 bp+37.9%
tRNA-Leu (UUR)Transfer RNA2,6812,75575 bp+–
ND1Protein-coding gene2,7583,712955 bp+39.6%
tRNA-IleTransfer RNA3,7133,78169 bp+–
tRNA-GlnTransfer RNA3,7793,85173 bp−–
tRNA-MetTransfer RNA3,8533,92169 bp+–
ND2Protein-coding gene3,9224,9631,042 bp+35.8%
tRNA-TrpTransfer RNA4,9645,03269 bp+–
tRNA-AlaTransfer RNA5,0475,11569 bp−–
tRNA-AsnTransfer RNA5,1175,18973 bp−–
tRNA-CysTransfer RNA5,2235,28967 bp−–
tRNA-TyrTransfer RNA5,2915,35767 bp−–
COX1Protein-coding gene5,3596,9031,545 bp+39.3%
tRNA-Ser (UCN)Transfer RNA6,9016,96969 bp−–
tRNA-AspTransfer RNA6,9757,04268 bp+–
COX2Protein-coding gene7,0437,726684 bp+37.3%
tRNA-LysTransfer RNA7,7307,79768 bp+–
ATP8Protein-coding gene7,7998,002204 bp+29.4%
ATP6Protein-coding gene7,9608,640681 bp+37.2%
COX3Protein-coding gene8,6409,423784 bp+41.7%
tRNA-GlyTransfer RNA9,4249,49269 bp+–
ND3Protein-coding gene9,4939,838346 bp+37.0%
tRNA-ArgTransfer RNA9,8409,90869 bp+–
ND4LProtein-coding gene9,90910,205297 bp+38.4%
ND4Protein-coding gene10,19911,5761,378 bp+37.5%
tRNA-HisTransfer RNA11,57711,64569 bp+–
tRNA-Ser (AGY)Transfer RNA11,64611,70459 bp+–
tRNA-Leu (CUN)Transfer RNA11,70511,77470 bp+–
ND5Protein-coding gene11,77513,5951,821 bp+37.0%
ND6Protein-coding gene13,57914,106528 bp−37.3%
tRNA-GluTransfer RNA14,10714,17569 bp−–
CYTBProtein-coding gene14,17915,3181,140 bp+41.3%
tRNA-ThrTransfer RNA15,31915,38870 bp+–
tRNA-ProTransfer RNA15,38915,45466 bp−–
D-loopControl region15,45616,7711,316 bp–41.5%

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