MitoAge

Paguma larvata

Masked palm civet

Add to compare Download FASTA
Maximum lifespan
27.4 yr
AnAge record
mtDNA size
16,710 bp
RefSeq NC_029403.1
GC content
37.25%
Whole genome
Non-coding
1,327 bp
D-loop 1,260 bp

Where Masked palm civet sits among 2,335 species

Whole-genome GC content against maximum lifespan. Masked palm civet has the 535th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Masked palm civet
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,710 bp
GC skew (G − C) / (G + C)
−0.296
AT skew (A − T) / (A + T)
+0.065

Life history

Maximum lifespan
27.4 years
Adult weight
4.3 kg
Litter or clutch size
2.3
Litters per year
2

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 02267)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, small sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,710 bp
Protein-coding11,338 bp
12S rRNA959 bp
16S rRNA1,575 bp
All tRNA1,513 bp
D-loop1,260 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp30.8%31.7%11.6%25.9%37.49%−0.380−0.015
ND2NADH dehydrogenase subunit 21,042 bp37.2%29.2%8.3%25.2%33.59%−0.503+0.121
COX1Cytochrome c oxidase subunit I1,545 bp28.2%34.3%16.4%21.1%37.48%−0.126−0.097
COX2Cytochrome c oxidase subunit II684 bp34.2%31.1%12.9%21.8%34.65%−0.257+0.047
ATP8ATP synthase F0 subunit 8204 bp41.2%27.9%5.9%25.0%30.88%−0.619+0.191
ATP6ATP synthase F0 subunit 6681 bp31.9%32.5%10.1%25.6%35.68%−0.432−0.009
COX3Cytochrome c oxidase subunit III784 bp29.0%32.3%14.0%24.7%38.78%−0.276−0.054
ND3NADH dehydrogenase subunit 3347 bp33.4%32.9%11.5%22.2%33.72%−0.316+0.009
ND4LNADH dehydrogenase subunit 4L297 bp30.3%35.7%11.8%22.2%34.01%−0.307−0.082
ND4NADH dehydrogenase subunit 41,378 bp33.8%30.5%10.7%25.0%35.70%−0.398+0.052
ND5NADH dehydrogenase subunit 51,821 bp32.5%30.6%10.6%26.3%36.90%−0.426+0.030
ND6NADH dehydrogenase subunit 6528 bp42.0%23.5%9.1%25.4%34.47%−0.473+0.283
CYTBCytochrome b1,140 bp30.8%30.3%12.2%26.8%38.95%−0.374+0.009
12S rRNA12S ribosomal RNA959 bp36.5%22.6%17.6%23.3%40.88%−0.138+0.235
16S rRNA16S ribosomal RNA1,575 bp36.9%24.9%17.1%21.1%38.22%−0.103+0.194
D-loopControl region (D-loop)1,260 bp31.3%24.3%14.9%29.5%44.44%−0.329+0.126

Codon usage

Counts per codon, darker is more frequent

3,800 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%
UUU120
UUC109
Leu L15.8%
UUA193
UUG15
CUU88
CUC63
CUA220
CUG22
Ile I9.1%
AUU209
AUC137
Met M6.3%
AUA213
AUG28
Val V4.7%
GUU44
GUC28
GUA97
GUG10
Ser S7.8%
UCU63
UCC65
UCA110
UCG4
AGU21
AGC35
Pro P5.1%
CCU64
CCC53
CCA75
CCG3
Thr T7.9%
ACU89
ACC64
ACA140
ACG6
Ala A6.7%
GCU80
GCC80
GCA85
GCG8
Tyr Y3.7%
UAU98
UAC42
His H2.5%
CAU52
CAC42
Gln Q2.4%
CAA88
CAG5
Asn N4.2%
AAU73
AAC85
Lys K2.6%
AAA91
AAG8
Asp D1.6%
GAU29
GAC33
Glu E2.7%
GAA87
GAG16
Cys C0.6%
UGU12
UGC11
Trp W2.7%
UGA98
UGG6
Arg R1.7%
CGU8
CGC10
CGA45
CGG1
Gly G5.6%
GGU41
GGC38
GGA112
GGG20
Stop 0.2%
UAA7
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_029403.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (37.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,028959 bp+40.9%
tRNA-ValTransfer RNA1,0291,09668 bp+–
16S rRNARibosomal RNA1,0972,6711,575 bp+38.2%
tRNA-Leu (UUR)Transfer RNA2,6722,74675 bp+–
ND1Protein-coding gene2,7493,703955 bp+37.5%
tRNA-IleTransfer RNA3,7043,77269 bp+–
tRNA-GlnTransfer RNA3,7703,84374 bp−–
tRNA-MetTransfer RNA3,8443,91269 bp+–
ND2Protein-coding gene3,9134,9541,042 bp+33.6%
tRNA-TrpTransfer RNA4,9555,02268 bp+–
tRNA-AlaTransfer RNA5,0395,10769 bp−–
tRNA-AsnTransfer RNA5,1095,18173 bp−–
tRNA-CysTransfer RNA5,2155,28268 bp−–
tRNA-TyrTransfer RNA5,2835,35068 bp−–
COX1Protein-coding gene5,3526,8961,545 bp+37.5%
tRNA-Ser (UCN)Transfer RNA6,8956,96167 bp−–
tRNA-AspTransfer RNA6,9687,03568 bp+–
COX2Protein-coding gene7,0367,719684 bp+34.7%
tRNA-LysTransfer RNA7,7237,79068 bp+–
ATP8Protein-coding gene7,7927,995204 bp+30.9%
ATP6Protein-coding gene7,9538,633681 bp+35.7%
COX3Protein-coding gene8,6339,416784 bp+38.8%
tRNA-GlyTransfer RNA9,4179,48569 bp+–
ND3Protein-coding gene9,4869,832347 bp+33.7%
tRNA-ArgTransfer RNA9,8339,90270 bp+–
ND4LProtein-coding gene9,90310,199297 bp+34.0%
ND4Protein-coding gene10,19311,5701,378 bp+35.7%
tRNA-HisTransfer RNA11,57111,63969 bp+–
tRNA-Ser (AGY)Transfer RNA11,64011,69859 bp+–
tRNA-Leu (CUN)Transfer RNA11,69911,76870 bp+–
ND5Protein-coding gene11,76913,5891,821 bp+36.9%
ND6Protein-coding gene13,57314,100528 bp−34.5%
tRNA-GluTransfer RNA14,10114,16969 bp−–
CYTBProtein-coding gene14,17315,3121,140 bp+39.0%
tRNA-ThrTransfer RNA15,31315,38371 bp+–
tRNA-ProTransfer RNA15,38515,45066 bp−–
D-loopControl region15,45116,7101,260 bp–44.4%

Downloads