MitoAge

Paradoxurus hermaphroditus

Asian palm civet

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Maximum lifespan
24.5 yr
AnAge record
mtDNA size
16,706 bp
RefSeq NC_039591.1
GC content
35.80%
Whole genome
Non-coding
1,321 bp
D-loop 1,321 bp

Where Asian palm civet sits among 2,335 species

Whole-genome GC content against maximum lifespan. Asian palm civet has the 667th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Asian palm civet
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,706 bp
GC skew (G − C) / (G + C)
−0.281
AT skew (A − T) / (A + T)
+0.050

Life history

Maximum lifespan
24.5 years
Adult weight
3.1 kg
Birth weight
88.7 g
Basal metabolic rate
5.534 W
Body temperature
36.5 °C
Female sexual maturity
341 days
Gestation or incubation
60 days
Litter or clutch size
3.4
Litters per year
2
Postnatal growth rate
0.0087 per day

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 02268)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, tiny sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,706 bp
Protein-coding11,338 bp
12S rRNA965 bp
16S rRNA1,575 bp
All tRNA1,513 bp
D-loop1,321 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp30.8%31.2%11.4%26.6%38.01%−0.399−0.007
ND2NADH dehydrogenase subunit 21,042 bp37.0%30.4%8.6%23.9%32.53%−0.469+0.098
COX1Cytochrome c oxidase subunit I1,545 bp28.7%35.3%15.9%20.1%35.99%−0.115−0.102
COX2Cytochrome c oxidase subunit II684 bp34.5%32.0%12.4%21.1%33.48%−0.258+0.037
ATP8ATP synthase F0 subunit 8204 bp42.6%27.9%5.4%24.0%29.41%−0.633+0.208
ATP6ATP synthase F0 subunit 6681 bp32.2%34.1%10.3%23.5%33.77%−0.391−0.029
COX3Cytochrome c oxidase subunit III784 bp28.6%33.7%14.0%23.7%37.76%−0.257−0.082
ND3NADH dehydrogenase subunit 3347 bp32.9%34.6%11.8%20.7%32.57%−0.274−0.026
ND4LNADH dehydrogenase subunit 4L297 bp31.0%37.0%11.1%20.9%31.99%−0.305−0.089
ND4NADH dehydrogenase subunit 41,378 bp34.0%32.2%10.2%23.5%33.75%−0.394+0.027
ND5NADH dehydrogenase subunit 51,821 bp33.2%32.0%10.2%24.5%34.76%−0.412+0.019
ND6NADH dehydrogenase subunit 6528 bp42.2%24.1%9.1%24.6%33.71%−0.461+0.274
CYTBCytochrome b1,140 bp31.3%31.2%11.9%25.5%37.46%−0.363+0.001
12S rRNA12S ribosomal RNA965 bp36.5%23.9%17.7%21.9%39.59%−0.105+0.208
16S rRNA16S ribosomal RNA1,575 bp37.7%26.3%16.7%19.3%36.00%−0.072+0.177
D-loopControl region (D-loop)1,321 bp32.2%25.9%14.3%27.6%41.94%−0.318+0.108

Codon usage

Counts per codon, darker is more frequent

3,800 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%
UUU127
UUC110
Leu L15.6%
UUA217
UUG11
CUU79
CUC62
CUA210
CUG13
Ile I9.2%
AUU247
AUC102
Met M6.6%
AUA221
AUG31
Val V4.6%
GUU45
GUC24
GUA94
GUG10
Ser S7.6%
UCU58
UCC60
UCA113
UCG2
AGU28
AGC27
Pro P5.2%
CCU62
CCC61
CCA75
CCG1
Thr T7.8%
ACU99
ACC59
ACA133
ACG7
Ala A6.6%
GCU80
GCC80
GCA89
GCG2
Tyr Y3.6%
UAU99
UAC39
His H2.5%
CAU57
CAC38
Gln Q2.4%
CAA89
CAG4
Asn N4.2%
AAU100
AAC58
Lys K2.7%
AAA96
AAG5
Asp D1.6%
GAU36
GAC26
Glu E2.7%
GAA85
GAG18
Cys C0.6%
UGU12
UGC11
Trp W2.7%
UGA102
UGG2
Arg R1.7%
CGU8
CGC11
CGA45
CGG0
Gly G5.6%
GGU53
GGC32
GGA105
GGG22
Stop 0.2%
UAA7
UAG0
AGA1
AGG0

Genome map

38 annotated features in NC_039591.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (35.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16969 bp+–
12S rRNARibosomal RNA701,034965 bp+39.6%
tRNA-ValTransfer RNA1,0341,10168 bp+–
16S rRNARibosomal RNA1,1002,6741,575 bp+36.0%
tRNA-Leu (UUR)Transfer RNA2,6752,74975 bp+–
ND1Protein-coding gene2,7523,706955 bp+38.0%
tRNA-IleTransfer RNA3,7073,77569 bp+–
tRNA-GlnTransfer RNA3,7733,84472 bp−–
tRNA-MetTransfer RNA3,8463,91469 bp+–
ND2Protein-coding gene3,9154,9561,042 bp+32.5%
tRNA-TrpTransfer RNA4,9575,02468 bp+–
tRNA-AlaTransfer RNA5,0405,10869 bp−–
tRNA-AsnTransfer RNA5,1105,18273 bp−–
tRNA-CysTransfer RNA5,2165,28368 bp−–
tRNA-TyrTransfer RNA5,2845,35168 bp−–
COX1Protein-coding gene5,3536,8971,545 bp+36.0%
tRNA-Ser (UCN)Transfer RNA6,8956,96369 bp−–
tRNA-AspTransfer RNA6,9697,03769 bp+–
COX2Protein-coding gene7,0387,721684 bp+33.5%
tRNA-LysTransfer RNA7,7257,79268 bp+–
ATP8Protein-coding gene7,7947,997204 bp+29.4%
ATP6Protein-coding gene7,9558,635681 bp+33.8%
COX3Protein-coding gene8,6359,418784 bp+37.8%
tRNA-GlyTransfer RNA9,4199,48769 bp+–
ND3Protein-coding gene9,4889,834347 bp+32.6%
tRNA-ArgTransfer RNA9,8359,90369 bp+–
ND4LProtein-coding gene9,90410,200297 bp+32.0%
ND4Protein-coding gene10,19411,5711,378 bp+33.7%
tRNA-HisTransfer RNA11,57211,64069 bp+–
tRNA-Ser (AGY)Transfer RNA11,64111,69959 bp+–
tRNA-Leu (CUN)Transfer RNA11,70011,76970 bp+–
ND5Protein-coding gene11,77013,5901,821 bp+34.8%
ND6Protein-coding gene13,57414,101528 bp−33.7%
tRNA-GluTransfer RNA14,10214,17069 bp−–
CYTBProtein-coding gene14,17415,3131,140 bp+37.5%
tRNA-ThrTransfer RNA15,31415,38471 bp+–
tRNA-ProTransfer RNA15,38515,45066 bp−–
D-loopControl region15,38616,7061,321 bp–41.9%

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