order · mtDNA statistics

Bucerotiformes

3 species in 3 families. Every region of their mitochondrial genomes, side by side.

Group

species

45.9%

mean GC, whole genome

SD 1.2, range 44.6–46.9%

17,061

median genome length, bp

Range 16,562–17,117 bp

families

Regions

GC content of each region across Bucerotiformes, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	3	45.91%	1.18	0.026	44.61%Upupa epops	46.21%	46.91%Bucorvus leadbeateri	–	–
Protein-coding	3	46.73%	1.53	0.033	45.05%Upupa epops	47.08%	48.05%Bucorvus leadbeateri	–	–
All rRNA	3	47.57%	0.39	0.008	47.18%Bucorvus leadbeateri	47.56%	47.96%Buceros bicornis	–	–
All tRNA	3	43.04%	0.86	0.020	42.18%Upupa epops	43.05%	43.90%Bucorvus leadbeateri	–	–
12S rRNA	3	50.09%	1.06	0.021	48.87%Bucorvus leadbeateri	50.62%	50.77%Buceros bicornis	–	–
16S rRNA	3	46.01%	0.28	0.006	45.69%Upupa epops	46.15%	46.20%Buceros bicornis	–	–
D-loop	3	38.97%	2.00	0.051	36.69%Upupa epops	39.82%	40.40%Bucorvus leadbeateri	–	–
ND1	3	47.25%	2.44	0.052	44.82%Upupa epops	47.24%	49.69%Bucorvus leadbeateri	–	–
ND2	3	44.39%	1.96	0.044	42.16%Upupa epops	45.19%	45.81%Bucorvus leadbeateri	–	–
COX1	3	47.97%	1.67	0.035	46.16%Upupa epops	48.29%	49.45%Bucorvus leadbeateri	–	–
COX2	3	46.20%	0.76	0.016	45.32%Buceros bicornis	46.64%	46.64%Bucorvus leadbeateri	–	–
ATP8	3	41.79%	3.42	0.082	38.79%Upupa epops	41.07%	45.51%Bucorvus leadbeateri	–	–
ATP6	3	45.44%	1.29	0.028	44.01%Upupa epops	45.83%	46.49%Buceros bicornis	–	–
COX3	3	48.81%	0.64	0.013	48.21%Upupa epops	48.72%	49.49%Buceros bicornis	–	–
ND3	3	45.11%	2.14	0.047	42.74%Upupa epops	45.71%	46.88%Buceros bicornis	–	–
ND4L	3	47.81%	1.54	0.032	46.46%Buceros bicornis	47.47%	49.49%Bucorvus leadbeateri	–	–
ND4	3	46.08%	1.43	0.031	44.48%Upupa epops	46.52%	47.24%Bucorvus leadbeateri	–	–
ND5	3	46.32%	1.90	0.041	44.15%Upupa epops	47.16%	47.66%Bucorvus leadbeateri	–	–
ND6	3	47.19%	1.93	0.041	45.40%Upupa epops	46.93%	49.23%Bucorvus leadbeateri	–	–
CYTB	3	48.18%	1.66	0.035	46.54%Upupa epops	48.12%	49.87%Bucorvus leadbeateri	–	–

Families of Bucerotiformes

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Families of Bucerotiformes

Bucorvidae	1	46.91%	–	–	46.91%Bucorvus leadbeateri	46.91%	46.91%Bucorvus leadbeateri	–	–
Upupidae	1	44.61%	–	–	44.61%Upupa epops	44.61%	44.61%Upupa epops	–	–
Bucerotidae	1	46.21%	–	–	46.21%Buceros bicornis	46.21%	46.21%Buceros bicornis	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Bucerotiformes

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Bucerotiformes taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.