order · mtDNA statistics

Lagomorpha

5 species in 2 families. Every region of their mitochondrial genomes, side by side.

Group

species

40.6%

mean GC, whole genome

SD 2.1, range 38.6–42.9%

17,245

median genome length, bp

Range 16,481–17,755 bp

families

Regions

GC content of each region across Lagomorpha, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	5	40.62%	2.09	0.051	38.56%Lepus timidus	40.21%	42.95%Ochotona princeps	−0.81	0.1
Protein-coding	5	40.88%	2.38	0.058	38.59%Lepus timidus	40.50%	43.43%Ochotona princeps	−0.79	0.11
All rRNA	5	40.36%	1.91	0.047	38.96%Oryctolagus cuniculus	38.97%	42.56%Ochotona hyperborea	−0.79	0.12
All tRNA	5	38.34%	1.21	0.032	36.80%Lepus timidus	39.08%	39.37%Ochotona hyperborea	−0.67	0.22
12S rRNA	5	40.88%	1.07	0.026	39.96%Lepus timidus	40.23%	42.31%Ochotona princeps	−0.88	0.05
16S rRNA	5	40.04%	2.45	0.061	38.19%Oryctolagus cuniculus	38.36%	43.07%Ochotona hyperborea	−0.75	0.14
D-loop	5	41.19%	2.12	0.051	38.96%Lepus timidus	41.11%	44.56%Ochotona princeps	−0.88	0.05
ND1	5	42.30%	2.63	0.062	39.37%Lepus timidus	42.41%	45.55%Ochotona princeps	−0.84	0.08
ND2	5	37.76%	3.37	0.089	34.10%Lepus timidus	36.78%	41.84%Ochotona princeps	−0.88	0.05
COX1	5	42.70%	2.17	0.051	40.27%Lepus timidus	42.61%	45.07%Ochotona hyperborea	−0.79	0.11
COX2	5	40.53%	1.11	0.027	39.47%Lepus europaeus	40.64%	42.11%Ochotona hyperborea	−0.46	0.43
ATP8	5	36.64%	2.14	0.059	33.33%Lepus europaeus	37.25%	38.65%Ochotona princeps	−0.45	0.44
ATP6	5	41.14%	1.97	0.048	38.62%Lepus europaeus	40.88%	43.82%Ochotona princeps	−0.64	0.24
COX3	5	43.75%	2.50	0.057	41.20%Lepus timidus	44.01%	46.94%Ochotona hyperborea	−0.66	0.22
ND3	5	38.66%	2.34	0.061	36.02%Oryctolagus cuniculus	38.15%	41.91%Ochotona princeps	−0.86	0.06
ND4L	5	37.44%	2.83	0.076	34.34%Lepus europaeus	36.03%	41.08%Ochotona hyperborea	−0.61	0.27
ND4	5	40.12%	2.70	0.067	37.16%Lepus europaeus	40.49%	42.89%Ochotona hyperborea	−0.70	0.19
ND5	5	39.37%	2.36	0.060	37.03%Lepus europaeus	38.52%	41.94%Ochotona hyperborea	−0.75	0.15
ND6	5	40.11%	3.69	0.092	36.38%Lepus timidus	39.81%	44.76%Ochotona hyperborea	−0.72	0.17
CYTB	5	43.73%	2.31	0.053	41.58%Lepus timidus	43.02%	47.10%Ochotona princeps	−0.87	0.05

Families of Lagomorpha

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Families of Lagomorpha

Leporidae	3	39.17%	0.91	0.023	38.56%Lepus timidus	38.73%	40.21%Oryctolagus cuniculus	–	–
Ochotonidae	2	42.80%	0.21	0.005	42.65%Ochotona hyperborea	42.80%	42.95%Ochotona princeps	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Lagomorpha

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Lagomorpha taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.