MitoAge

Lepus timidus

Mountain hare

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Maximum lifespan
18 yr
AnAge record
mtDNA size
17,755 bp
RefSeq NC_024040.1
GC content
38.56%
Whole genome
Non-coding
2,379 bp
D-loop 2,308 bp

Where Mountain hare sits among 2,335 species

Whole-genome GC content against maximum lifespan. Mountain hare has the 1,036th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Mountain hare
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome17,755 bp
GC skew (G − C) / (G + C)
−0.327
AT skew (A − T) / (A + T)
+0.036

Life history

Maximum lifespan
18 years
Adult weight
4.2 kg
Birth weight
107.9 g
Basal metabolic rate
8.443 W
Body temperature
39.7 °C
Female sexual maturity
266 days
Gestation or incubation
50 days
Litter or clutch size
2
Litters per year
2.1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02599)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome17,755 bp
Protein-coding11,338 bp
12S rRNA956 bp
16S rRNA1,577 bp
All tRNA1,511 bp
D-loop2,308 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp29.9%30.7%11.6%27.7%39.37%−0.410−0.012
ND2NADH dehydrogenase subunit 21,044 bp35.7%30.2%8.7%25.4%34.10%−0.489+0.084
COX1Cytochrome c oxidase subunit I1,542 bp27.4%32.4%16.9%23.3%40.27%−0.159−0.084
COX2Cytochrome c oxidase subunit II684 bp29.2%31.3%14.3%25.1%39.47%−0.274−0.034
ATP8ATP synthase F0 subunit 8204 bp36.3%27.9%6.4%29.4%35.78%−0.644+0.130
ATP6ATP synthase F0 subunit 6681 bp30.4%29.4%11.6%28.6%40.24%−0.423+0.017
COX3Cytochrome c oxidase subunit III784 bp27.7%31.1%14.7%26.5%41.20%−0.288−0.059
ND3NADH dehydrogenase subunit 3347 bp29.7%33.1%13.3%23.9%37.18%−0.287−0.055
ND4LNADH dehydrogenase subunit 4L297 bp25.9%38.0%13.5%22.6%36.03%−0.252−0.189
ND4NADH dehydrogenase subunit 41,378 bp31.1%31.3%10.2%27.3%37.52%−0.455−0.003
ND5NADH dehydrogenase subunit 51,812 bp31.1%31.3%10.8%26.8%37.53%−0.426−0.004
ND6NADH dehydrogenase subunit 6525 bp40.8%22.9%6.9%29.5%36.38%−0.623+0.281
CYTBCytochrome b1,140 bp28.2%30.3%12.6%28.9%41.58%−0.392−0.036
12S rRNA12S ribosomal RNA956 bp36.4%23.6%17.9%22.1%39.96%−0.105+0.213
16S rRNA16S ribosomal RNA1,577 bp35.9%25.7%17.6%20.8%38.36%−0.084+0.165
D-loopControl region (D-loop)2,308 bp31.0%28.9%10.1%28.1%38.96%−0.469+0.035

Codon usage

Counts per codon, darker is more frequent

3,796 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.4%
UUU129
UUC113
Leu L16.0%
UUA138
UUG11
CUU134
CUC100
CUA195
CUG28
Ile I9.4%
AUU216
AUC142
Met M6.1%
AUA186
AUG46
Val V4.7%
GUU59
GUC28
GUA77
GUG14
Ser S7.6%
UCU61
UCC57
UCA107
UCG7
AGU28
AGC27
Pro P5.2%
CCU57
CCC56
CCA81
CCG4
Thr T7.7%
ACU76
ACC74
ACA137
ACG7
Ala A6.8%
GCU66
GCC99
GCA87
GCG5
Tyr Y3.3%
UAU71
UAC54
His H2.6%
CAU35
CAC62
Gln Q2.4%
CAA78
CAG12
Asn N4.1%
AAU75
AAC82
Lys K2.4%
AAA81
AAG10
Asp D1.8%
GAU36
GAC34
Glu E2.5%
GAA74
GAG22
Cys C0.6%
UGU8
UGC14
Trp W2.7%
UGA94
UGG10
Arg R1.7%
CGU12
CGC9
CGA44
CGG1
Gly G5.7%
GGU44
GGC62
GGA85
GGG26
Stop 0.2%
UAA6
UAG2
AGA0
AGG1

Genome map

38 annotated features in NC_024040.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (38.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA681,023956 bp+40.0%
tRNA-ValTransfer RNA1,0241,08966 bp+–
16S rRNARibosomal RNA1,0912,6671,577 bp+38.4%
tRNA-Leu (UUR)Transfer RNA2,6672,74478 bp+–
ND1Protein-coding gene2,7453,699955 bp+39.4%
tRNA-IleTransfer RNA3,6993,76971 bp+–
tRNA-GlnTransfer RNA3,7663,83772 bp−–
tRNA-MetTransfer RNA3,8473,91569 bp+–
ND2Protein-coding gene3,9164,9591,044 bp+34.1%
tRNA-TrpTransfer RNA4,9655,03268 bp+–
tRNA-AlaTransfer RNA5,0345,10067 bp−–
tRNA-AsnTransfer RNA5,1015,17373 bp−–
tRNA-CysTransfer RNA5,2075,27266 bp−–
tRNA-TyrTransfer RNA5,2735,33866 bp−–
COX1Protein-coding gene5,3506,8911,542 bp+40.3%
tRNA-Ser (UCN)Transfer RNA6,8946,96269 bp−–
tRNA-AspTransfer RNA6,9667,03469 bp+–
COX2Protein-coding gene7,0357,718684 bp+39.5%
tRNA-LysTransfer RNA7,7217,79373 bp+–
ATP8Protein-coding gene7,7947,997204 bp+35.8%
ATP6Protein-coding gene7,9558,635681 bp+40.2%
COX3Protein-coding gene8,6359,418784 bp+41.2%
tRNA-GlyTransfer RNA9,4189,48972 bp+–
ND3Protein-coding gene9,4899,835347 bp+37.2%
tRNA-ArgTransfer RNA9,8369,90368 bp+–
ND4LProtein-coding gene9,90510,201297 bp+36.0%
ND4Protein-coding gene10,19511,5721,378 bp+37.5%
tRNA-HisTransfer RNA11,57311,64169 bp+–
tRNA-Ser (AGY)Transfer RNA11,64211,70059 bp+–
tRNA-Leu (CUN)Transfer RNA11,70111,77070 bp+–
ND5Protein-coding gene11,77113,5821,812 bp+37.5%
ND6Protein-coding gene13,57914,103525 bp−36.4%
tRNA-GluTransfer RNA14,10414,17168 bp−–
CYTBProtein-coding gene14,17515,3141,140 bp+41.6%
tRNA-ThrTransfer RNA15,31415,38168 bp+–
tRNA-ProTransfer RNA15,38215,44766 bp−–
D-loopControl region15,44817,7552,308 bp–39.0%

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