order · mtDNA statistics

Mugiliformes

7 species in 1 family. Every region of their mitochondrial genomes, side by side.

Group

species

45.3%

mean GC, whole genome

SD 0.8, range 44.0–46.3%

16,832

median genome length, bp

Range 16,685–17,216 bp

family

Regions

GC content of each region across Mugiliformes, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	7	45.27%	0.82	0.018	43.99%Moolgarda cunnesius	45.28%	46.28%Planiliza macrolepis	0.12	0.8
Protein-coding	7	46.32%	1.05	0.023	44.50%Moolgarda cunnesius	46.26%	47.54%Planiliza macrolepis	0.20	0.67
All rRNA	7	45.93%	0.35	0.008	45.41%Moolgarda cunnesius	46.00%	46.35%Chelon labrosus	0.24	0.6
All tRNA	7	43.78%	0.70	0.016	42.87%Chelon labrosus	43.62%	44.81%Mugil cephalus	0.02	0.96
12S rRNA	7	47.78%	0.65	0.014	46.93%Moolgarda cunnesius	48.06%	48.44%Oedalechilus labeo	0.13	0.78
16S rRNA	7	44.90%	0.42	0.009	44.47%Mugil cephalus	44.79%	45.46%Aldrichetta forsteri	0.20	0.67
D-loop	7	34.36%	2.27	0.066	31.67%Mugil cephalus	34.79%	37.20%Planiliza macrolepis	−0.30	0.52
ND1	7	46.20%	0.84	0.018	45.30%Mugil cephalus	45.74%	47.38%Planiliza macrolepis	0.14	0.77
ND2	7	48.36%	1.72	0.036	45.03%Moolgarda cunnesius	48.71%	50.43%Planiliza macrolepis	−0.04	0.93
COX1	7	45.62%	1.19	0.026	43.51%Moolgarda cunnesius	45.80%	47.12%Planiliza macrolepis	0.11	0.82
COX2	7	44.08%	1.60	0.036	41.82%Mugil cephalus	43.42%	46.02%Planiliza lauvergnii	−0.21	0.64
ATP8	7	45.92%	2.34	0.051	43.45%Aldrichetta forsteri	45.83%	50.00%Planiliza macrolepis	−0.19	0.69
ATP6	7	45.37%	1.06	0.023	43.86%Planiliza lauvergnii	45.31%	47.08%Aldrichetta forsteri	0.39	0.39
COX3	7	47.01%	1.42	0.030	44.90%Moolgarda cunnesius	46.68%	48.72%Planiliza lauvergnii	0.10	0.83
ND3	7	46.66%	1.66	0.036	43.27%Moolgarda cunnesius	46.99%	48.42%Mugil cephalus	0.28	0.55
ND4L	7	49.74%	1.06	0.021	47.81%Aldrichetta forsteri	50.17%	50.84%Mugil cephalus	0.18	0.7
ND4	7	46.43%	1.78	0.038	42.94%Moolgarda cunnesius	46.92%	48.15%Planiliza macrolepis	0.36	0.42
ND5	7	45.63%	1.33	0.029	44.14%Oedalechilus labeo	45.33%	47.84%Chelon labrosus	0.36	0.42
ND6	7	47.90%	1.19	0.025	46.21%Moolgarda cunnesius	48.08%	49.23%Mugil cephalus	0.59	0.17
CYTB	7	46.00%	0.86	0.019	44.99%Oedalechilus labeo	46.05%	47.02%Planiliza macrolepis	−0.34	0.46

Families of Mugiliformes

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Families of Mugiliformes

Mugilidae	7	45.27%	0.82	0.018	43.99%Moolgarda cunnesius	45.28%	46.28%Planiliza macrolepis	0.12	0.8

Codon usage

Share of each codon in all 13 protein-coding genes, across Mugiliformes

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Mugiliformes taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.