order · mtDNA statistics

Percopsiformes

3 species in 2 families. Every region of their mitochondrial genomes, side by side.

Group

species

47.3%

mean GC, whole genome

SD 3.7, range 43.2–50.1%

16,601

median genome length, bp

Range 16,079–16,669 bp

families

Regions

GC content of each region across Percopsiformes, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	3	47.35%	3.70	0.078	43.15%Aphredoderus sayanus	48.76%	50.13%Percopsis transmontana	–	–
Protein-coding	3	47.75%	4.09	0.086	43.06%Aphredoderus sayanus	49.60%	50.58%Percopsis transmontana	–	–
All rRNA	3	47.82%	2.28	0.048	45.26%Aphredoderus sayanus	48.59%	49.62%Percopsis transmontana	–	–
All tRNA	3	46.50%	2.20	0.047	43.97%Aphredoderus sayanus	47.60%	47.93%Percopsis transmontana	–	–
12S rRNA	3	48.89%	2.24	0.046	46.50%Aphredoderus sayanus	49.20%	50.95%Percopsis transmontana	–	–
16S rRNA	3	47.22%	2.33	0.049	44.56%Aphredoderus sayanus	48.24%	48.86%Percopsis transmontana	–	–
D-loop	3	40.25%	3.16	0.079	36.73%Aphredoderus sayanus	41.15%	42.86%Percopsis transmontana	–	–
ND1	3	49.81%	5.14	0.103	43.88%Aphredoderus sayanus	52.41%	53.13%Percopsis transmontana	–	–
ND2	3	48.49%	5.72	0.118	41.94%Aphredoderus sayanus	51.10%	52.44%Percopsis transmontana	–	–
COX1	3	47.98%	3.10	0.065	44.40%Aphredoderus sayanus	49.65%	49.90%Percopsis omiscomaycus	–	–
COX2	3	45.59%	3.15	0.069	41.97%Aphredoderus sayanus	47.03%	47.76%Percopsis transmontana	–	–
ATP8	3	44.84%	2.09	0.047	42.86%Aphredoderus sayanus	44.64%	47.02%Percopsis transmontana	–	–
ATP6	3	46.54%	2.30	0.049	43.92%Aphredoderus sayanus	47.44%	48.25%Percopsis omiscomaycus	–	–
COX3	3	48.58%	3.64	0.075	44.59%Aphredoderus sayanus	49.43%	51.72%Percopsis transmontana	–	–
ND3	3	49.47%	5.88	0.119	42.98%Aphredoderus sayanus	51.00%	54.44%Percopsis transmontana	–	–
ND4L	3	51.63%	5.23	0.101	45.79%Aphredoderus sayanus	53.20%	55.89%Percopsis transmontana	–	–
ND4	3	48.47%	5.05	0.104	42.72%Aphredoderus sayanus	50.47%	52.21%Percopsis transmontana	–	–
ND5	3	47.15%	3.68	0.078	42.90%Aphredoderus sayanus	49.05%	49.48%Percopsis transmontana	–	–
ND6	3	45.85%	4.25	0.093	41.95%Aphredoderus sayanus	45.21%	50.38%Percopsis transmontana	–	–
CYTB	3	45.90%	4.46	0.097	40.75%Aphredoderus sayanus	48.20%	48.73%Percopsis omiscomaycus	–	–

Families of Percopsiformes

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Families of Percopsiformes

Percopsidae	2	49.45%	0.97	0.020	48.76%Percopsis omiscomaycus	49.45%	50.13%Percopsis transmontana	–	–
Aphredoderidae	1	43.15%	–	–	43.15%Aphredoderus sayanus	43.15%	43.15%Aphredoderus sayanus	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Percopsiformes

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Percopsiformes taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.