Percopsis transmontana
Sand roller
GC content
50.13%
Whole genome
Non-coding
514 bp
D-loop 329 bp
Where Sand roller sits among 2,335 species
Whole-genome GC content against maximum lifespan. Sand roller has the 1,902nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,079 bp
- GC skew (G − C) / (G + C)
- −0.262
- AT skew (A − T) / (A + T)
- +0.104
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,079 bp
Protein-coding11,405 bp
12S rRNA946 bp
16S rRNA1,670 bp
All tRNA1,544 bp
D-loop329 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 53.13% | −0.336 | +0.050 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 52.44% | −0.365 | +0.123 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 49.65% | −0.190 | −0.058 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 47.76% | −0.242 | +0.091 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 47.02% | −0.367 | +0.146 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 47.44% | −0.414 | +0.047 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 51.72% | −0.291 | +0.008 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 54.44% | −0.368 | −0.157 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 55.89% | −0.325 | −0.084 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 52.21% | −0.318 | 0.000 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 49.48% | −0.369 | +0.126 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 50.38% | −0.414 | +0.614 | |||||
| CYTBCytochrome b | 1,141 bp | 48.20% | −0.327 | +0.002 | |||||
| 12S rRNA12S ribosomal RNA | 946 bp | 50.95% | −0.120 | +0.259 | |||||
| 16S rRNA16S ribosomal RNA | 1,670 bp | 48.86% | −0.088 | +0.290 | |||||
| D-loopControl region (D-loop) | 329 bp | 42.86% | −0.248 | +0.032 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU101
UUC127
Leu L17.6%
UUA49
UUG31
CUU105
CUC150
CUA226
CUG110
Ile I6.0%
AUU85
AUC145
Met M4.2%
AUA88
AUG70
Val V5.8%
GUU44
GUC46
GUA77
GUG55
Ser S6.3%
UCU39
UCC74
UCA65
UCG8
AGU3
AGC49
Pro P5.9%
CCU27
CCC126
CCA60
CCG13
Thr T8.4%
ACU20
ACC138
ACA138
ACG22
Ala A9.9%
GCU36
GCC189
GCA139
GCG13
Tyr Y2.6%
UAU25
UAC74
His H3.0%
CAU11
CAC103
Gln Q2.4%
CAA74
CAG19
Asn N2.9%
AAU21
AAC88
Lys K2.0%
AAA45
AAG31
Asp D1.9%
GAU10
GAC63
Glu E2.7%
GAA63
GAG39
Cys C0.8%
UGU6
UGC25
Trp W3.0%
UGA79
UGG35
Arg R2.0%
CGU3
CGC18
CGA39
CGG15
Gly G6.5%
GGU17
GGC87
GGA77
GGG65
Stop 0.2%
UAA4
UAG1
AGA0
AGG1
Genome map
38 annotated features in NC_003168.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (50.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,014 | 946 bp | + | 51.0% |
| tRNA-Val | Transfer RNA | 1,015 | 1,085 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,086 | 2,755 | 1,670 bp | + | 48.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,756 | 2,829 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,830 | 3,804 | 975 bp | + | 53.1% |
| tRNA-Ile | Transfer RNA | 3,809 | 3,878 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,878 | 3,948 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,948 | 4,016 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,017 | 5,061 | 1,045 bp | + | 52.4% |
| tRNA-Trp | Transfer RNA | 5,062 | 5,131 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,275 | 5,343 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,345 | 5,417 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,431 | 5,495 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,497 | 5,567 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,569 | 7,119 | 1,551 bp | + | 49.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,120 | 7,190 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,194 | 7,262 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,276 | 7,966 | 691 bp | + | 47.8% |
| tRNA-Lys | Transfer RNA | 7,967 | 8,040 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 8,042 | 8,209 | 168 bp | + | 47.0% |
| ATP6 | Protein-coding gene | 8,200 | 8,882 | 683 bp | + | 47.4% |
| COX3 | Protein-coding gene | 8,883 | 9,667 | 785 bp | + | 51.7% |
| tRNA-Gly | Transfer RNA | 9,668 | 9,738 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,739 | 10,087 | 349 bp | + | 54.4% |
| tRNA-Arg | Transfer RNA | 10,088 | 10,157 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,158 | 10,454 | 297 bp | + | 55.9% |
| ND4 | Protein-coding gene | 10,448 | 11,828 | 1,381 bp | + | 52.2% |
| tRNA-His | Transfer RNA | 11,829 | 11,897 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,898 | 11,965 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,967 | 12,039 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,040 | 13,878 | 1,839 bp | + | 49.5% |
| ND6 | Protein-coding gene | 13,874 | 14,395 | 522 bp | − | 50.4% |
| tRNA-Glu | Transfer RNA | 14,396 | 14,464 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,469 | 15,609 | 1,141 bp | + | 48.2% |
| tRNA-Thr | Transfer RNA | 15,610 | 15,681 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,681 | 15,750 | 70 bp | − | – |
| D-loop | Control region | 15,751 | 16,079 | 329 bp | – | 42.9% |