Percopsis omiscomaycus
Trout-perch
GC content
48.76%
Whole genome
Non-coding
1,102 bp
D-loop 1,040 bp
Where Trout-perch sits among 2,335 species
Whole-genome GC content against maximum lifespan. Trout-perch has the 2,105th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,669 bp
- GC skew (G − C) / (G + C)
- −0.254
- AT skew (A − T) / (A + T)
- +0.083
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,669 bp
Protein-coding11,405 bp
12S rRNA943 bp
16S rRNA1,675 bp
All tRNA1,544 bp
D-loop1,040 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 52.41% | −0.292 | −0.009 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 51.10% | −0.446 | +0.135 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 49.90% | −0.186 | −0.066 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 47.03% | −0.249 | +0.098 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 44.64% | −0.440 | +0.204 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 48.25% | −0.370 | −0.006 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.43% | −0.242 | −0.023 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 51.00% | −0.303 | −0.111 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 53.20% | −0.342 | −0.065 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 50.47% | −0.306 | −0.015 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 49.05% | −0.337 | +0.091 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.21% | −0.390 | +0.552 | |||||
| CYTBCytochrome b | 1,141 bp | 48.73% | −0.335 | −0.009 | |||||
| 12S rRNA12S ribosomal RNA | 943 bp | 49.21% | −0.099 | +0.207 | |||||
| 16S rRNA16S ribosomal RNA | 1,675 bp | 48.24% | −0.074 | +0.278 | |||||
| D-loopControl region (D-loop) | 1,040 bp | 41.15% | −0.234 | −0.029 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU106
UUC131
Leu L17.5%
UUA56
UUG27
CUU131
CUC131
CUA199
CUG123
Ile I6.0%
AUU99
AUC129
Met M4.4%
AUA96
AUG73
Val V5.9%
GUU45
GUC60
GUA81
GUG38
Ser S6.4%
UCU32
UCC80
UCA61
UCG9
AGU11
AGC52
Pro P5.9%
CCU29
CCC116
CCA58
CCG20
Thr T8.4%
ACU35
ACC135
ACA133
ACG15
Ala A9.5%
GCU38
GCC182
GCA129
GCG13
Tyr Y2.7%
UAU26
UAC76
His H2.9%
CAU11
CAC98
Gln Q2.5%
CAA75
CAG19
Asn N2.7%
AAU17
AAC86
Lys K2.0%
AAA54
AAG22
Asp D1.9%
GAU17
GAC56
Glu E2.8%
GAA72
GAG33
Cys C0.9%
UGU6
UGC27
Trp W3.0%
UGA88
UGG27
Arg R1.9%
CGU5
CGC14
CGA43
CGG12
Gly G6.4%
GGU14
GGC80
GGA75
GGG74
Stop 0.2%
UAA6
UAG0
AGA0
AGG1
Genome map
38 annotated features in NC_068672.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (48.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,011 | 943 bp | + | 49.2% |
| tRNA-Val | Transfer RNA | 1,012 | 1,082 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,083 | 2,757 | 1,675 bp | + | 48.2% |
| tRNA-Leu (UUR) | Transfer RNA | 2,758 | 2,831 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,832 | 3,806 | 975 bp | + | 52.4% |
| tRNA-Ile | Transfer RNA | 3,811 | 3,880 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,880 | 3,950 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,950 | 4,018 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,019 | 5,063 | 1,045 bp | + | 51.1% |
| tRNA-Trp | Transfer RNA | 5,064 | 5,133 | 70 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,135 | 5,203 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,205 | 5,277 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,310 | 5,374 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,376 | 5,446 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,448 | 6,998 | 1,551 bp | + | 49.9% |
| tRNA-Ser (UCN) | Transfer RNA | 6,999 | 7,069 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,073 | 7,141 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,155 | 7,845 | 691 bp | + | 47.0% |
| tRNA-Lys | Transfer RNA | 7,846 | 7,918 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,920 | 8,087 | 168 bp | + | 44.6% |
| ATP6 | Protein-coding gene | 8,078 | 8,761 | 684 bp | + | 48.3% |
| COX3 | Protein-coding gene | 8,761 | 9,545 | 785 bp | + | 49.4% |
| tRNA-Gly | Transfer RNA | 9,546 | 9,616 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,617 | 9,965 | 349 bp | + | 51.0% |
| tRNA-Arg | Transfer RNA | 9,966 | 10,035 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,036 | 10,332 | 297 bp | + | 53.2% |
| ND4 | Protein-coding gene | 10,326 | 11,706 | 1,381 bp | + | 50.5% |
| tRNA-His | Transfer RNA | 11,707 | 11,775 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,776 | 11,843 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,845 | 11,917 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,918 | 13,756 | 1,839 bp | + | 49.1% |
| ND6 | Protein-coding gene | 13,752 | 14,273 | 522 bp | − | 45.2% |
| tRNA-Glu | Transfer RNA | 14,274 | 14,342 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,347 | 15,487 | 1,141 bp | + | 48.7% |
| tRNA-Thr | Transfer RNA | 15,488 | 15,560 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,560 | 15,629 | 70 bp | − | – |
| D-loop | Control region | 15,630 | 16,669 | 1,040 bp | – | 41.2% |