Aphredoderus sayanus
Pirate perch
GC content
43.15%
Whole genome
Non-coding
1,056 bp
D-loop 991 bp
Where Pirate perch sits among 2,335 species
Whole-genome GC content against maximum lifespan. Pirate perch has the 2,080th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,601 bp
- GC skew (G − C) / (G + C)
- −0.305
- AT skew (A − T) / (A + T)
- +0.109
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,601 bp
Protein-coding11,403 bp
12S rRNA944 bp
16S rRNA1,672 bp
All tRNA1,535 bp
D-loop991 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 973 bp | 43.89% | −0.358 | +0.077 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,042 bp | 41.94% | −0.515 | +0.197 | |||||
| COX1Cytochrome c oxidase subunit I | 1,554 bp | 44.40% | −0.223 | −0.021 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 41.97% | −0.338 | +0.052 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 42.86% | −0.611 | +0.146 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 43.92% | −0.453 | +0.024 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 44.59% | −0.331 | +0.016 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 42.98% | −0.373 | −0.015 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 45.79% | −0.456 | +0.019 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 42.72% | −0.359 | +0.072 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 42.90% | −0.407 | +0.101 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 41.95% | −0.434 | +0.472 | |||||
| CYTBCytochrome b | 1,141 bp | 40.75% | −0.389 | +0.038 | |||||
| 12S rRNA12S ribosomal RNA | 944 bp | 46.50% | −0.148 | +0.224 | |||||
| 16S rRNA16S ribosomal RNA | 1,672 bp | 44.56% | −0.111 | +0.262 | |||||
| D-loopControl region (D-loop) | 991 bp | 36.73% | −0.181 | +0.021 |
Codon usage
Counts per codon, darker is more frequent3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU109
UUC115
Leu L16.8%
UUA129
UUG18
CUU86
CUC98
CUA274
CUG35
Ile I7.8%
AUU172
AUC124
Met M5.0%
AUA149
AUG40
Val V4.7%
GUU37
GUC32
GUA85
GUG26
Ser S6.6%
UCU53
UCC65
UCA74
UCG6
AGU9
AGC43
Pro P5.9%
CCU27
CCC86
CCA101
CCG9
Thr T8.7%
ACU49
ACC134
ACA145
ACG2
Ala A8.1%
GCU37
GCC140
GCA118
GCG13
Tyr Y3.1%
UAU49
UAC68
His H2.7%
CAU18
CAC84
Gln Q2.6%
CAA93
CAG5
Asn N3.6%
AAU45
AAC91
Lys K2.1%
AAA77
AAG3
Asp D1.8%
GAU29
GAC40
Glu E2.6%
GAA88
GAG11
Cys C0.8%
UGU13
UGC17
Trp W3.1%
UGA103
UGG14
Arg R2.0%
CGU6
CGC18
CGA47
CGG4
Gly G6.2%
GGU23
GGC84
GGA98
GGG32
Stop 0.1%
UAA3
UAG0
AGA0
AGG2
Genome map
38 annotated features in NC_004372.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (43.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,013 | 944 bp | + | 46.5% |
| tRNA-Val | Transfer RNA | 1,014 | 1,086 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,758 | 1,672 bp | + | 44.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,759 | 2,832 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,833 | 3,805 | 973 bp | + | 43.9% |
| tRNA-Ile | Transfer RNA | 3,813 | 3,881 | 69 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,881 | 3,951 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,951 | 4,019 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,020 | 5,061 | 1,042 bp | + | 41.9% |
| tRNA-Trp | Transfer RNA | 5,062 | 5,130 | 69 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,132 | 5,200 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,202 | 5,274 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,310 | 5,374 | 65 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,375 | 5,442 | 68 bp | − | – |
| COX1 | Protein-coding gene | 5,444 | 6,997 | 1,554 bp | + | 44.4% |
| tRNA-Ser (UCN) | Transfer RNA | 6,989 | 7,059 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,064 | 7,132 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,145 | 7,835 | 691 bp | + | 42.0% |
| tRNA-Lys | Transfer RNA | 7,836 | 7,907 | 72 bp | + | – |
| ATP8 | Protein-coding gene | 7,909 | 8,076 | 168 bp | + | 42.9% |
| ATP6 | Protein-coding gene | 8,067 | 8,749 | 683 bp | + | 43.9% |
| COX3 | Protein-coding gene | 8,750 | 9,534 | 785 bp | + | 44.6% |
| tRNA-Gly | Transfer RNA | 9,535 | 9,603 | 69 bp | + | – |
| ND3 | Protein-coding gene | 9,604 | 9,952 | 349 bp | + | 43.0% |
| tRNA-Arg | Transfer RNA | 9,953 | 10,021 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,022 | 10,318 | 297 bp | + | 45.8% |
| ND4 | Protein-coding gene | 10,312 | 11,692 | 1,381 bp | + | 42.7% |
| tRNA-His | Transfer RNA | 11,693 | 11,762 | 70 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,763 | 11,830 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,832 | 11,904 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,905 | 13,743 | 1,839 bp | + | 42.9% |
| ND6 | Protein-coding gene | 13,739 | 14,260 | 522 bp | − | 42.0% |
| tRNA-Glu | Transfer RNA | 14,261 | 14,329 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,332 | 15,472 | 1,141 bp | + | 40.8% |
| tRNA-Thr | Transfer RNA | 15,473 | 15,542 | 70 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,542 | 15,610 | 69 bp | − | – |
| D-loop | Control region | 15,611 | 16,601 | 991 bp | – | 36.7% |