order · mtDNA statistics

Tetraodontiformes

9 species in 5 families. Every region of their mitochondrial genomes, side by side.

Group

species

46.8%

mean GC, whole genome

SD 1.3, range 44.2–48.6%

16,459

median genome length, bp

Range 16,297–16,518 bp

families

Regions

GC content of each region across Tetraodontiformes, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	9	46.84%	1.34	0.029	44.24%Takifugu rubripes	46.96%	48.57%Lagocephalus sceleratus	−0.31	0.42
Protein-coding	9	48.03%	1.57	0.033	45.22%Takifugu rubripes	47.81%	50.16%Lagocephalus sceleratus	−0.35	0.36
All rRNA	9	46.02%	1.39	0.030	43.99%Thamnaconus modestus	46.75%	47.40%Tetraodon lineatus	−0.18	0.64
All tRNA	9	45.00%	0.86	0.019	43.73%Takifugu rubripes	44.86%	46.24%Lagocephalus sceleratus	−0.04	0.92
12S rRNA	9	48.19%	1.74	0.036	45.46%Thamnaconus modestus	48.69%	50.58%Tetraodon lineatus	−0.27	0.48
16S rRNA	9	44.79%	1.29	0.029	42.80%Takifugu rubripes	45.36%	46.42%Mola mola	−0.10	0.8
D-loop	9	36.23%	1.94	0.053	32.03%Takifugu rubripes	36.54%	38.80%Tetraodon lineatus	−0.01	0.99
ND1	9	48.68%	2.03	0.042	44.00%Takifugu rubripes	48.82%	51.38%Nelusetta ayraudi	−0.08	0.84
ND2	9	49.20%	2.20	0.045	43.84%Takifugu rubripes	49.90%	51.29%Nelusetta ayraudi	0.18	0.64
COX1	9	47.49%	2.13	0.045	44.04%Balistes vetula	47.15%	51.09%Lagocephalus sceleratus	−0.71	0.03
COX2	9	45.01%	1.07	0.024	42.98%Balistes vetula	44.86%	46.89%Lagocephalus sceleratus	−0.53	0.15
ATP8	9	45.41%	4.00	0.088	39.29%Balistes vetula	47.02%	49.40%Diodon hystrix	−0.28	0.46
ATP6	9	47.75%	1.88	0.039	45.61%Takifugu rubripes	47.58%	51.68%Lagocephalus sceleratus	−0.39	0.3
COX3	9	48.10%	1.29	0.027	46.11%Balistes vetula	48.22%	49.81%Tetraodon lineatus	−0.83	0.006
ND3	9	49.54%	1.89	0.038	47.56%Diodon hystrix	49.00%	52.72%Lagocephalus sceleratus	−0.58	0.1
ND4L	9	50.80%	2.22	0.044	46.46%Takifugu rubripes	50.84%	54.55%Nelusetta ayraudi	−0.23	0.55
ND4	9	48.50%	1.55	0.032	46.49%Takifugu rubripes	48.81%	50.62%Nelusetta ayraudi	−0.20	0.6
ND5	9	47.47%	2.33	0.049	43.12%Takifugu rubripes	47.25%	51.22%Lagocephalus sceleratus	−0.23	0.56
ND6	9	47.96%	2.88	0.060	42.72%Takifugu rubripes	47.89%	53.64%Nelusetta ayraudi	0.16	0.67
CYTB	9	48.26%	1.61	0.033	45.21%Takifugu rubripes	48.46%	49.96%Thamnaconus modestus	−0.27	0.48

Families of Tetraodontiformes

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Families of Tetraodontiformes

Tetraodontidae	3	46.75%	2.25	0.048	44.24%Takifugu rubripes	47.43%	48.57%Lagocephalus sceleratus	–	–
Molidae	2	46.80%	0.22	0.005	46.65%Mola mola	46.80%	46.96%Masturus lanceolatus	–	–
Monacanthidae	2	47.22%	1.36	0.029	46.26%Thamnaconus modestus	47.22%	48.18%Nelusetta ayraudi	–	–
Diodontidae	1	47.64%	–	–	47.64%Diodon hystrix	47.64%	47.64%Diodon hystrix	–	–
Balistidae	1	45.63%	–	–	45.63%Balistes vetula	45.63%	45.63%Balistes vetula	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Tetraodontiformes

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Tetraodontiformes taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.