Tetraodon lineatus
Nile globe-fish
GC content
47.43%
Whole genome
Non-coding
906 bp
D-loop 750 bp
Where Nile globe-fish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Nile globe-fish has the 1,955th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,459 bp
- GC skew (G − C) / (G + C)
- −0.341
- AT skew (A − T) / (A + T)
- +0.112
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, small sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,459 bp
Protein-coding11,402 bp
12S rRNA945 bp
16S rRNA1,669 bp
All tRNA1,546 bp
D-loop750 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 48.51% | −0.404 | +0.076 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,040 bp | 49.90% | −0.511 | +0.148 | |||||
| COX1Cytochrome c oxidase subunit I | 1,560 bp | 49.17% | −0.252 | −0.016 | |||||
| COX2Cytochrome c oxidase subunit II | 688 bp | 44.77% | −0.338 | +0.068 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 48.81% | −0.659 | +0.186 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 48.25% | −0.485 | +0.028 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 49.81% | −0.315 | +0.025 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 52.15% | −0.484 | −0.114 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 51.52% | −0.477 | −0.097 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 48.88% | −0.452 | +0.074 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 47.25% | −0.473 | +0.122 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 46.74% | −0.484 | +0.489 | |||||
| CYTBCytochrome b | 1,137 bp | 48.46% | −0.419 | +0.041 | |||||
| 12S rRNA12S ribosomal RNA | 945 bp | 50.58% | −0.105 | +0.216 | |||||
| 16S rRNA16S ribosomal RNA | 1,669 bp | 45.60% | −0.175 | +0.256 | |||||
| D-loopControl region (D-loop) | 750 bp | 38.80% | −0.134 | +0.063 |
Codon usage
Counts per codon, darker is more frequent3,806 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.9%
UUU58
UUC167
Leu L16.4%
UUA48
UUG33
CUU95
CUC180
CUA225
CUG45
Ile I6.8%
AUU90
AUC170
Met M4.1%
AUA102
AUG54
Val V4.9%
GUU42
GUC50
GUA68
GUG27
Ser S7.2%
UCU37
UCC96
UCA73
UCG16
AGU5
AGC47
Pro P6.8%
CCU32
CCC97
CCA117
CCG12
Thr T7.9%
ACU44
ACC140
ACA109
ACG9
Ala A8.3%
GCU39
GCC169
GCA92
GCG15
Tyr Y3.3%
UAU33
UAC93
His H3.2%
CAU25
CAC95
Gln Q2.9%
CAA92
CAG18
Asn N3.4%
AAU24
AAC105
Lys K2.2%
AAA69
AAG15
Asp D2.0%
GAU20
GAC58
Glu E2.7%
GAA73
GAG28
Cys C0.6%
UGU8
UGC16
Trp W3.1%
UGA98
UGG21
Arg R2.2%
CGU11
CGC22
CGA44
CGG8
Gly G5.8%
GGU21
GGC92
GGA78
GGG28
Stop 0.2%
UAA6
UAG0
AGA0
AGG2
Genome map
38 annotated features in NC_028551.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,013 | 945 bp | + | 50.6% |
| tRNA-Val | Transfer RNA | 1,014 | 1,086 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,087 | 2,755 | 1,669 bp | + | 45.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,756 | 2,829 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,830 | 3,804 | 975 bp | + | 48.5% |
| tRNA-Ile | Transfer RNA | 3,808 | 3,877 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,877 | 3,947 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,947 | 4,014 | 68 bp | + | – |
| ND2 | Protein-coding gene | 4,015 | 5,054 | 1,040 bp | + | 49.9% |
| tRNA-Trp | Transfer RNA | 5,055 | 5,126 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,128 | 5,196 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,199 | 5,271 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,306 | 5,369 | 64 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,370 | 5,439 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,441 | 7,000 | 1,560 bp | + | 49.2% |
| tRNA-Ser (UCN) | Transfer RNA | 6,992 | 7,064 | 73 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,068 | 7,137 | 70 bp | + | – |
| COX2 | Protein-coding gene | 7,145 | 7,832 | 688 bp | + | 44.8% |
| tRNA-Lys | Transfer RNA | 7,833 | 7,906 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,908 | 8,075 | 168 bp | + | 48.8% |
| ATP6 | Protein-coding gene | 8,066 | 8,749 | 684 bp | + | 48.3% |
| COX3 | Protein-coding gene | 8,749 | 9,533 | 785 bp | + | 49.8% |
| tRNA-Gly | Transfer RNA | 9,534 | 9,604 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,605 | 9,953 | 349 bp | + | 52.2% |
| tRNA-Arg | Transfer RNA | 9,954 | 10,022 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,024 | 10,320 | 297 bp | + | 51.5% |
| ND4 | Protein-coding gene | 10,314 | 11,694 | 1,381 bp | + | 48.9% |
| tRNA-His | Transfer RNA | 11,695 | 11,763 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,764 | 11,830 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,837 | 11,908 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,909 | 13,747 | 1,839 bp | + | 47.3% |
| ND6 | Protein-coding gene | 13,743 | 14,264 | 522 bp | − | 46.7% |
| tRNA-Glu | Transfer RNA | 14,265 | 14,333 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,337 | 15,473 | 1,137 bp | + | 48.5% |
| tRNA-Thr | Transfer RNA | 15,478 | 15,549 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,549 | 15,619 | 71 bp | − | – |
| D-loop | Control region | 15,710 | 16,459 | 750 bp | – | 38.8% |