order · mtDNA statistics

Zeiformes

4 species in 2 families. Every region of their mitochondrial genomes, side by side.

Group

species

43.0%

mean GC, whole genome

SD 0.8, range 42.1–43.8%

16,730

median genome length, bp

Range 16,065–16,750 bp

families

Regions

GC content of each region across Zeiformes, % of A + C + G + T

Parameter

Chart

GC % of every region
Region
Whole genome	4	42.98%	0.82	0.019	42.11%Zenopsis nebulosus	43.01%	43.77%Neocyttus rhomboidalis	–	–
Protein-coding	4	43.29%	0.97	0.022	42.05%Zenopsis nebulosus	43.52%	44.07%Neocyttus rhomboidalis	–	–
All rRNA	4	44.58%	0.47	0.010	43.99%Zenopsis nebulosus	44.66%	45.00%Allocyttus niger	–	–
All tRNA	4	43.56%	0.75	0.017	42.85%Zeus faber	43.56%	44.29%Allocyttus niger	–	–
12S rRNA	4	48.75%	0.48	0.010	48.41%Allocyttus niger	48.58%	49.42%Zeus faber	–	–
16S rRNA	4	42.21%	0.91	0.022	41.29%Zenopsis nebulosus	42.24%	43.08%Allocyttus niger	–	–
D-loop	4	33.34%	3.36	0.101	30.00%Zenopsis nebulosus	32.93%	37.51%Neocyttus rhomboidalis	–	–
ND1	4	43.69%	0.25	0.006	43.38%Allocyttus niger	43.74%	43.90%Neocyttus rhomboidalis	–	–
ND2	4	43.79%	1.14	0.026	42.66%Zeus faber	43.71%	45.08%Neocyttus rhomboidalis	–	–
COX1	4	43.09%	0.80	0.019	41.99%Zenopsis nebulosus	43.25%	43.89%Zeus faber	–	–
COX2	4	42.58%	0.80	0.019	41.82%Zenopsis nebulosus	42.40%	43.70%Zeus faber	–	–
ATP8	4	43.45%	0.84	0.019	42.86%Allocyttus niger	43.15%	44.64%Zeus faber	–	–
ATP6	4	41.00%	1.63	0.040	38.80%Zeus faber	41.43%	42.31%Neocyttus rhomboidalis	–	–
COX3	4	44.46%	1.16	0.026	43.18%Zeus faber	44.46%	45.73%Allocyttus niger	–	–
ND3	4	44.77%	1.31	0.029	43.27%Zenopsis nebulosus	44.84%	46.13%Allocyttus niger	–	–
ND4L	4	47.64%	2.14	0.045	44.44%Zenopsis nebulosus	48.65%	48.82%Allocyttus niger	–	–
ND4	4	42.87%	1.08	0.025	41.49%Zenopsis nebulosus	42.92%	44.14%Allocyttus niger	–	–
ND5	4	42.09%	1.82	0.043	40.08%Zenopsis nebulosus	42.17%	43.94%Neocyttus rhomboidalis	–	–
ND6	4	45.84%	1.73	0.038	43.33%Zenopsis nebulosus	46.36%	47.32%Zeus faber	–	–
CYTB	4	43.08%	1.51	0.035	41.37%Zenopsis nebulosus	43.25%	44.43%Neocyttus rhomboidalis	–	–

Families of Zeiformes

GC content of the whole genome, % of A + C + G + T

Region

Parameter

Chart

Families of Zeiformes

Oreosomatidae	2	43.68%	0.14	0.003	43.58%Allocyttus niger	43.68%	43.77%Neocyttus rhomboidalis	–	–
Zeidae	2	42.28%	0.23	0.006	42.11%Zenopsis nebulosus	42.28%	42.44%Zeus faber	–	–

Codon usage

Share of each codon in all 13 protein-coding genes, across Zeiformes

Gene

Loading codon usage…

Every species, region by region

Each region's page lists the value of every species, with the same statistics by class, order or family and a CSV download.

Whole genome Protein-coding All rRNA All tRNA 12S rRNA 16S rRNA D-loop ND1 ND2 COX1 COX2 ATP8 ATP6 COX3 ND3 ND4L ND4 ND5 ND6 CYTB

Zeiformes taxon page All data downloads

The charts

Each chart draws the rows of the table under it, in the table's order: sort a column to reorder the chart.Chart sets its axis.
Distribution: the range (line), mean ± SD (bar), median (tick) and mean (dot). Lengths of the regions are on a log scale.
Variation: the coefficient of variation, or the SD for the skews, which vary around zero.
Lifespan r: r with its 95% confidence interval (Fisher z). Lifespan map: r of every parameter in every region at once, bold where the Benjamini–Hochberg q-value over the map is below 0.05.

What the numbers are

Species: species with the region annotated. SD is the sample standard deviation, CV = SD / mean.
Base percentages are over A + C + G + T, so GC % + AT % = 100. Skews are on the L strand as deposited in RefSeq: GC skew = (G − C) / (G + C), AT skew = (A − T) / (A + T).
Min and Max name the species with the extreme value.

Lifespan columns

r is the Pearson correlation of the parameter with log₁₀ maximum lifespan within the group (5 or more species), and p its two-tailed p-value, as on the original MitoAge. They are not corrected for multiple testing or for shared ancestry: the plot shows Benjamini–Hochberg q-values and phylogenetic contrasts.

The original site labelled the base columns with their complements, so its skews have the opposite sign. Seemethods.