Allocyttus niger

Black oreo

Maximum lifespan

100 yr

AnAge record

mtDNA size

16,750 bp

RefSeq NC_004398.1

GC content

43.58%

Whole genome

Non-coding

1,183 bp

D-loop 1,127 bp

Where Black oreo sits among 2,335 species

Whole-genome GC content against maximum lifespan. Black oreo has the 30th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,750 bp

GC skew (G − C) / (G + C): −0.265
AT skew (A − T) / (A + T): +0.040

Life history

Maximum lifespan: 100 years
Adult weight: 825 g
Female sexual maturity: 27 years
Male sexual maturity: 27 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04595)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,750 bp

Protein-coding11,409 bp

12S rRNA946 bp

16S rRNA1,676 bp

All tRNA1,549 bp

D-loop1,127 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Allocyttus niger genes

ND1NADH dehydrogenase subunit 1	975 bp	26.8%	29.8%	14.8%	28.6%	43.39%	−0.319	−0.054
ND2NADH dehydrogenase subunit 2	1,036 bp	29.4%	26.2%	11.7%	32.7%	44.40%	−0.474	+0.059
COX1Cytochrome c oxidase subunit I	1,563 bp	26.1%	30.6%	18.2%	25.0%	43.25%	−0.157	−0.080
COX2Cytochrome c oxidase subunit II	691 bp	28.5%	29.1%	16.4%	26.0%	42.40%	−0.229	−0.010
ATP8ATP synthase F0 subunit 8	168 bp	33.3%	23.8%	10.7%	32.1%	42.86%	−0.500	+0.167
ATP6ATP synthase F0 subunit 6	683 bp	25.5%	32.4%	12.3%	29.9%	42.17%	−0.417	−0.119
COX3Cytochrome c oxidase subunit III	785 bp	24.8%	29.4%	16.7%	29.0%	45.73%	−0.270	−0.085
ND3NADH dehydrogenase subunit 3	349 bp	23.2%	30.7%	15.2%	30.9%	46.13%	−0.342	−0.138
ND4LNADH dehydrogenase subunit 4L	297 bp	22.6%	28.6%	14.8%	34.0%	48.82%	−0.393	−0.118
ND4NADH dehydrogenase subunit 4	1,382 bp	27.5%	28.4%	13.9%	30.2%	44.14%	−0.370	−0.016
ND5NADH dehydrogenase subunit 5	1,839 bp	29.1%	27.6%	13.5%	29.8%	43.28%	−0.377	+0.028
ND6NADH dehydrogenase subunit 6	522 bp	38.7%	14.9%	13.0%	33.3%	46.36%	−0.438	+0.443
CYTBCytochrome b	1,141 bp	26.6%	29.1%	15.5%	28.7%	44.26%	−0.299	−0.044
12S rRNA12S ribosomal RNA	946 bp	31.5%	20.1%	21.7%	26.7%	48.41%	−0.105	+0.221
16S rRNA16S ribosomal RNA	1,676 bp	35.1%	21.8%	20.0%	23.1%	43.08%	−0.072	+0.233
D-loopControl region (D-loop)	1,127 bp	33.6%	31.9%	13.8%	20.7%	34.52%	−0.198	+0.027

Codon usage

Counts per codon, darker is more frequent

Gene

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%

UUU137

UUC92

Leu L17.4%

UUA156

UUG17

CUU138

CUC143

CUA170

CUG37

Ile I7.4%

AUU189

AUC94

Met M4.2%

AUA117

AUG42

Val V5.8%

GUU62

GUC43

GUA88

GUG29

Ser S6.4%

UCU48

UCC68

UCA72

UCG0

AGU14

AGC40

Pro P5.8%

CCU45

CCC106

CCA58

CCG13

Thr T8.0%

ACU48

ACC132

ACA115

ACG8

Ala A8.7%

GCU65

GCC148

GCA103

GCG17

Tyr Y2.8%

UAU55

UAC51

His H2.8%

CAU30

CAC76

Gln Q2.6%

CAA88

CAG12

Asn N3.2%

AAU55

AAC66

Lys K2.1%

AAA72

AAG7

Asp D1.9%

GAU28

GAC44

Glu E2.6%

GAA79

GAG19

Cys C0.7%

UGU8

UGC18

Trp W3.1%

UGA102

UGG17

Arg R1.9%

CGU5

CGC15

CGA45

CGG8

Gly G6.5%

GGU26

GGC75

GGA83

GGG63

Stop 0.2%

UAA4

UAG0

AGA0

AGG2

Genome map

38 annotated features in NC_004398.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (43.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Allocyttus niger (NC_004398.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,014	946 bp	+	48.4%
tRNA-Val	Transfer RNA	1,015	1,086	72 bp	+	–
16S rRNA	Ribosomal RNA	1,087	2,762	1,676 bp	+	43.1%
tRNA-Leu (UUR)	Transfer RNA	2,763	2,836	74 bp	+	–
ND1	Protein-coding gene	2,837	3,811	975 bp	+	43.4%
tRNA-Ile	Transfer RNA	3,814	3,882	69 bp	+	–
tRNA-Gln	Transfer RNA	3,882	3,952	71 bp	−	–
tRNA-Met	Transfer RNA	3,952	4,021	70 bp	+	–
ND2	Protein-coding gene	4,022	5,057	1,036 bp	+	44.4%
tRNA-Trp	Transfer RNA	5,058	5,128	71 bp	+	–
tRNA-Ala	Transfer RNA	5,129	5,197	69 bp	−	–
tRNA-Asn	Transfer RNA	5,199	5,271	73 bp	−	–
tRNA-Cys	Transfer RNA	5,302	5,366	65 bp	−	–
tRNA-Tyr	Transfer RNA	5,368	5,436	69 bp	−	–
COX1	Protein-coding gene	5,438	7,000	1,563 bp	+	43.3%
tRNA-Ser (UCN)	Transfer RNA	6,988	7,058	71 bp	−	–
tRNA-Asp	Transfer RNA	7,062	7,132	71 bp	+	–
COX2	Protein-coding gene	7,145	7,835	691 bp	+	42.4%
tRNA-Lys	Transfer RNA	7,836	7,909	74 bp	+	–
ATP8	Protein-coding gene	7,911	8,078	168 bp	+	42.9%
ATP6	Protein-coding gene	8,069	8,751	683 bp	+	42.2%
COX3	Protein-coding gene	8,752	9,536	785 bp	+	45.7%
tRNA-Gly	Transfer RNA	9,537	9,608	72 bp	+	–
ND3	Protein-coding gene	9,609	9,957	349 bp	+	46.1%
tRNA-Arg	Transfer RNA	9,958	10,026	69 bp	+	–
ND4L	Protein-coding gene	10,027	10,323	297 bp	+	48.8%
ND4	Protein-coding gene	10,317	11,698	1,382 bp	+	44.1%
tRNA-His	Transfer RNA	11,699	11,767	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,768	11,835	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,837	11,909	73 bp	+	–
ND5	Protein-coding gene	11,910	13,748	1,839 bp	+	43.3%
ND6	Protein-coding gene	13,744	14,265	522 bp	−	46.4%
tRNA-Glu	Transfer RNA	14,266	14,334	69 bp	−	–
CYTB	Protein-coding gene	14,339	15,479	1,141 bp	+	44.3%
tRNA-Thr	Transfer RNA	15,480	15,553	74 bp	+	–
tRNA-Pro	Transfer RNA	15,554	15,623	70 bp	−	–
D-loop	Control region	15,624	16,750	1,127 bp	–	34.5%