Neocyttus rhomboidalis

Spiky oreo

Maximum lifespan

100 yr

AnAge record

mtDNA size

16,745 bp

RefSeq NC_004399.1

GC content

43.77%

Whole genome

Non-coding

1,180 bp

D-loop 1,125 bp

Where Spiky oreo sits among 2,335 species

Whole-genome GC content against maximum lifespan. Spiky oreo has the 31st longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,745 bp

GC skew (G − C) / (G + C): −0.266
AT skew (A − T) / (A + T): +0.039

Life history

Maximum lifespan: 100 years
Adult weight: 1.1 kg

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04597)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,745 bp

Protein-coding11,409 bp

12S rRNA946 bp

16S rRNA1,673 bp

All tRNA1,550 bp

D-loop1,125 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Neocyttus rhomboidalis genes

ND1NADH dehydrogenase subunit 1	975 bp	26.4%	29.7%	14.8%	29.1%	43.90%	−0.327	−0.060
ND2NADH dehydrogenase subunit 2	1,036 bp	29.2%	25.7%	12.0%	33.1%	45.08%	−0.469	+0.065
COX1Cytochrome c oxidase subunit I	1,563 bp	25.8%	30.9%	18.2%	25.0%	43.25%	−0.157	−0.089
COX2Cytochrome c oxidase subunit II	691 bp	28.7%	28.9%	16.2%	26.2%	42.40%	−0.235	−0.005
ATP8ATP synthase F0 subunit 8	168 bp	32.1%	25.0%	11.3%	31.5%	42.86%	−0.472	+0.125
ATP6ATP synthase F0 subunit 6	683 bp	25.8%	31.9%	12.0%	30.3%	42.31%	−0.433	−0.107
COX3Cytochrome c oxidase subunit III	785 bp	24.6%	30.3%	17.1%	28.0%	45.10%	−0.243	−0.104
ND3NADH dehydrogenase subunit 3	349 bp	22.9%	31.5%	15.5%	30.1%	45.56%	−0.321	−0.158
ND4LNADH dehydrogenase subunit 4L	297 bp	22.6%	28.6%	15.8%	33.0%	48.82%	−0.352	−0.118
ND4NADH dehydrogenase subunit 4	1,382 bp	27.7%	29.4%	13.7%	29.2%	42.91%	−0.363	−0.029
ND5NADH dehydrogenase subunit 5	1,839 bp	29.1%	26.9%	13.2%	30.8%	43.94%	−0.401	+0.040
ND6NADH dehydrogenase subunit 6	522 bp	39.7%	14.0%	12.6%	33.7%	46.36%	−0.455	+0.479
CYTBCytochrome b	1,141 bp	26.6%	28.9%	15.8%	28.7%	44.44%	−0.290	−0.041
12S rRNA12S ribosomal RNA	946 bp	31.4%	20.2%	21.6%	26.8%	48.41%	−0.109	+0.217
16S rRNA16S ribosomal RNA	1,673 bp	35.0%	22.1%	20.0%	23.0%	42.92%	−0.070	+0.227
D-loopControl region (D-loop)	1,125 bp	32.1%	30.4%	14.9%	22.6%	37.51%	−0.204	+0.027

Codon usage

Counts per codon, darker is more frequent

Gene

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%

UUU134

UUC97

Leu L17.3%

UUA152

UUG20

CUU145

CUC135

CUA174

CUG31

Ile I7.4%

AUU196

AUC86

Met M4.3%

AUA117

AUG46

Val V5.8%

GUU63

GUC47

GUA82

GUG27

Ser S6.4%

UCU47

UCC73

UCA68

UCG1

AGU18

AGC36

Pro P5.8%

CCU51

CCC100

CCA62

CCG8

Thr T7.8%

ACU49

ACC130

ACA112

ACG5

Ala A8.9%

GCU65

GCC153

GCA107

GCG15

Tyr Y2.8%

UAU54

UAC53

His H2.8%

CAU26

CAC80

Gln Q2.6%

CAA90

CAG10

Asn N3.2%

AAU51

AAC69

Lys K2.1%

AAA72

AAG8

Asp D1.9%

GAU26

GAC46

Glu E2.6%

GAA78

GAG22

Cys C0.7%

UGU10

UGC16

Trp W3.1%

UGA102

UGG17

Arg R1.9%

CGU6

CGC14

CGA41

CGG12

Gly G6.5%

GGU22

GGC79

GGA78

GGG67

Stop 0.2%

UAA4

UAG0

AGA0

AGG2

Genome map

38 annotated features in NC_004399.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (43.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Neocyttus rhomboidalis (NC_004399.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,014	946 bp	+	48.4%
tRNA-Val	Transfer RNA	1,015	1,086	72 bp	+	–
16S rRNA	Ribosomal RNA	1,087	2,759	1,673 bp	+	42.9%
tRNA-Leu (UUR)	Transfer RNA	2,760	2,833	74 bp	+	–
ND1	Protein-coding gene	2,834	3,808	975 bp	+	43.9%
tRNA-Ile	Transfer RNA	3,811	3,879	69 bp	+	–
tRNA-Gln	Transfer RNA	3,879	3,949	71 bp	−	–
tRNA-Met	Transfer RNA	3,949	4,018	70 bp	+	–
ND2	Protein-coding gene	4,019	5,054	1,036 bp	+	45.1%
tRNA-Trp	Transfer RNA	5,055	5,125	71 bp	+	–
tRNA-Ala	Transfer RNA	5,126	5,194	69 bp	−	–
tRNA-Asn	Transfer RNA	5,196	5,268	73 bp	−	–
tRNA-Cys	Transfer RNA	5,299	5,363	65 bp	−	–
tRNA-Tyr	Transfer RNA	5,364	5,433	70 bp	−	–
COX1	Protein-coding gene	5,435	6,997	1,563 bp	+	43.3%
tRNA-Ser (UCN)	Transfer RNA	6,985	7,055	71 bp	−	–
tRNA-Asp	Transfer RNA	7,059	7,129	71 bp	+	–
COX2	Protein-coding gene	7,142	7,832	691 bp	+	42.4%
tRNA-Lys	Transfer RNA	7,833	7,906	74 bp	+	–
ATP8	Protein-coding gene	7,908	8,075	168 bp	+	42.9%
ATP6	Protein-coding gene	8,066	8,748	683 bp	+	42.3%
COX3	Protein-coding gene	8,749	9,533	785 bp	+	45.1%
tRNA-Gly	Transfer RNA	9,534	9,605	72 bp	+	–
ND3	Protein-coding gene	9,606	9,954	349 bp	+	45.6%
tRNA-Arg	Transfer RNA	9,955	10,023	69 bp	+	–
ND4L	Protein-coding gene	10,024	10,320	297 bp	+	48.8%
ND4	Protein-coding gene	10,314	11,695	1,382 bp	+	42.9%
tRNA-His	Transfer RNA	11,696	11,764	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,765	11,832	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,834	11,906	73 bp	+	–
ND5	Protein-coding gene	11,907	13,745	1,839 bp	+	43.9%
ND6	Protein-coding gene	13,741	14,262	522 bp	−	46.4%
tRNA-Glu	Transfer RNA	14,263	14,331	69 bp	−	–
CYTB	Protein-coding gene	14,336	15,476	1,141 bp	+	44.4%
tRNA-Thr	Transfer RNA	15,477	15,550	74 bp	+	–
tRNA-Pro	Transfer RNA	15,551	15,620	70 bp	−	–
D-loop	Control region	15,621	16,745	1,125 bp	–	37.5%