Zeus faber

European john dory

Maximum lifespan

12 yr

AnAge record

mtDNA size

16,715 bp

RefSeq NC_003190.1

GC content

42.44%

Whole genome

Non-coding

1,150 bp

D-loop 1,088 bp

Where European john dory sits among 2,335 species

Whole-genome GC content against maximum lifespan. European john dory has the 1,411th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,715 bp

GC skew (G − C) / (G + C): −0.258
AT skew (A − T) / (A + T): +0.032

Life history

Maximum lifespan: 12 years
Adult weight: 4.4 kg
Female sexual maturity: 3.5 years
Male sexual maturity: 3.5 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04599)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,715 bp

Protein-coding11,408 bp

12S rRNA953 bp

16S rRNA1,672 bp

All tRNA1,545 bp

D-loop1,088 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Zeus faber genes

ND1NADH dehydrogenase subunit 1	975 bp	25.4%	30.7%	15.0%	28.9%	43.90%	−0.318	−0.093
ND2NADH dehydrogenase subunit 2	1,036 bp	31.3%	26.1%	11.2%	31.5%	42.66%	−0.475	+0.091
COX1Cytochrome c oxidase subunit I	1,563 bp	25.2%	30.9%	18.3%	25.6%	43.89%	−0.166	−0.101
COX2Cytochrome c oxidase subunit II	691 bp	28.4%	27.9%	17.1%	26.6%	43.71%	−0.219	+0.008
ATP8ATP synthase F0 subunit 8	168 bp	31.5%	23.8%	12.5%	32.1%	44.64%	−0.440	+0.140
ATP6ATP synthase F0 subunit 6	683 bp	26.4%	34.8%	11.6%	27.2%	38.80%	−0.404	−0.139
COX3Cytochrome c oxidase subunit III	785 bp	25.5%	31.3%	17.5%	25.7%	43.19%	−0.192	−0.103
ND3NADH dehydrogenase subunit 3	349 bp	23.8%	32.1%	14.3%	29.8%	44.13%	−0.351	−0.149
ND4LNADH dehydrogenase subunit 4L	297 bp	22.6%	29.0%	15.5%	33.0%	48.49%	−0.361	−0.124
ND4NADH dehydrogenase subunit 4	1,381 bp	27.9%	29.2%	13.7%	29.3%	42.94%	−0.363	−0.023
ND5NADH dehydrogenase subunit 5	1,839 bp	30.3%	28.7%	12.5%	28.5%	41.06%	−0.391	+0.028
ND6NADH dehydrogenase subunit 6	522 bp	38.5%	14.2%	13.0%	34.3%	47.32%	−0.449	+0.462
CYTBCytochrome b	1,141 bp	27.9%	29.9%	15.3%	26.9%	42.24%	−0.274	−0.035
12S rRNA12S ribosomal RNA	953 bp	29.3%	21.3%	21.7%	27.7%	49.42%	−0.121	+0.158
16S rRNA16S ribosomal RNA	1,672 bp	35.3%	23.1%	19.7%	21.9%	41.57%	−0.053	+0.208
D-loopControl region (D-loop)	1,088 bp	36.8%	31.9%	12.0%	19.3%	31.34%	−0.232	+0.071

Codon usage

Counts per codon, darker is more frequent

Gene

3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%

UUU152

UUC76

Leu L17.1%

UUA157

UUG22

CUU142

CUC104

CUA183

CUG42

Ile I7.4%

AUU195

AUC85

Met M4.5%

AUA127

AUG44

Val V5.9%

GUU71

GUC43

GUA80

GUG29

Ser S6.8%

UCU53

UCC81

UCA71

UCG5

AGU11

AGC39

Pro P5.9%

CCU49

CCC109

CCA61

CCG4

Thr T7.4%

ACU60

ACC107

ACA112

ACG2

Ala A8.7%

GCU61

GCC146

GCA118

GCG8

Tyr Y2.9%

UAU63

UAC46

His H2.8%

CAU32

CAC73

Gln Q2.6%

CAA90

CAG9

Asn N3.2%

AAU54

AAC69

Lys K2.1%

AAA74

AAG7

Asp D2.0%

GAU28

GAC47

Glu E2.6%

GAA71

GAG28

Cys C0.7%

UGU10

UGC15

Trp W3.1%

UGA99

UGG18

Arg R1.9%

CGU12

CGC11

CGA45

CGG5

Gly G6.5%

GGU15

GGC71

GGA102

GGG58

Stop 0.2%

UAA4

UAG0

AGA0

AGG2

Genome map

38 annotated features in NC_003190.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (42.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Zeus faber (NC_003190.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,021	953 bp	+	49.4%
tRNA-Val	Transfer RNA	1,022	1,093	72 bp	+	–
16S rRNA	Ribosomal RNA	1,094	2,765	1,672 bp	+	41.6%
tRNA-Leu (UUR)	Transfer RNA	2,766	2,839	74 bp	+	–
ND1	Protein-coding gene	2,840	3,814	975 bp	+	43.9%
tRNA-Ile	Transfer RNA	3,817	3,886	70 bp	+	–
tRNA-Gln	Transfer RNA	3,886	3,956	71 bp	−	–
tRNA-Met	Transfer RNA	3,956	4,024	69 bp	+	–
ND2	Protein-coding gene	4,025	5,060	1,036 bp	+	42.7%
tRNA-Trp	Transfer RNA	5,061	5,131	71 bp	+	–
tRNA-Ala	Transfer RNA	5,132	5,200	69 bp	−	–
tRNA-Asn	Transfer RNA	5,205	5,277	73 bp	−	–
tRNA-Cys	Transfer RNA	5,308	5,373	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,374	5,443	70 bp	−	–
COX1	Protein-coding gene	5,445	7,007	1,563 bp	+	43.9%
tRNA-Ser (UCN)	Transfer RNA	6,995	7,065	71 bp	−	–
tRNA-Asp	Transfer RNA	7,072	7,140	69 bp	+	–
COX2	Protein-coding gene	7,153	7,843	691 bp	+	43.7%
tRNA-Lys	Transfer RNA	7,844	7,917	74 bp	+	–
ATP8	Protein-coding gene	7,919	8,086	168 bp	+	44.6%
ATP6	Protein-coding gene	8,077	8,759	683 bp	+	38.8%
COX3	Protein-coding gene	8,760	9,544	785 bp	+	43.2%
tRNA-Gly	Transfer RNA	9,545	9,615	71 bp	+	–
ND3	Protein-coding gene	9,616	9,964	349 bp	+	44.1%
tRNA-Arg	Transfer RNA	9,965	10,033	69 bp	+	–
ND4L	Protein-coding gene	10,034	10,330	297 bp	+	48.5%
ND4	Protein-coding gene	10,324	11,704	1,381 bp	+	42.9%
tRNA-His	Transfer RNA	11,705	11,773	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,774	11,841	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,843	11,915	73 bp	+	–
ND5	Protein-coding gene	11,916	13,754	1,839 bp	+	41.1%
ND6	Protein-coding gene	13,750	14,271	522 bp	−	47.3%
tRNA-Glu	Transfer RNA	14,272	14,340	69 bp	−	–
CYTB	Protein-coding gene	14,346	15,486	1,141 bp	+	42.2%
tRNA-Thr	Transfer RNA	15,487	15,558	72 bp	+	–
tRNA-Pro	Transfer RNA	15,558	15,627	70 bp	−	–
D-loop	Control region	15,628	16,715	1,088 bp	–	31.3%