Acanthogobius hasta
javeline goby
GC content
45.46%
Whole genome
Non-coding
1,072 bp
D-loop 984 bp
Where javeline goby sits among 2,335 species
Whole-genome GC content against maximum lifespan. javeline goby has the 2,318th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,663 bp
- GC skew (G − C) / (G + C)
- −0.233
- AT skew (A − T) / (A + T)
- +0.016
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,663 bp
Protein-coding11,426 bp
12S rRNA943 bp
16S rRNA1,684 bp
All tRNA1,553 bp
D-loop984 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.77% | −0.298 | −0.106 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,047 bp | 46.90% | −0.348 | −0.004 | |||||
| COX1Cytochrome c oxidase subunit I | 1,560 bp | 45.71% | −0.184 | −0.098 | |||||
| COX2Cytochrome c oxidase subunit II | 699 bp | 46.78% | −0.284 | +0.043 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 42.86% | −0.333 | +0.021 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 42.84% | −0.372 | −0.110 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.13% | −0.211 | −0.080 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 42.74% | −0.253 | −0.214 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.49% | −0.333 | −0.085 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 47.00% | −0.313 | −0.019 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,842 bp | 44.68% | −0.324 | +0.005 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.66% | −0.370 | +0.418 | |||||
| CYTBCytochrome b | 1,141 bp | 45.75% | −0.264 | −0.134 | |||||
| 12S rRNA12S ribosomal RNA | 943 bp | 46.55% | −0.062 | +0.210 | |||||
| 16S rRNA16S ribosomal RNA | 1,684 bp | 45.07% | −0.086 | +0.228 | |||||
| D-loopControl region (D-loop) | 984 bp | 35.26% | −0.176 | −0.017 |
Codon usage
Counts per codon, darker is more frequent3,816 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.0%
UUU130
UUC99
Leu L17.2%
UUA82
UUG27
CUU187
CUC121
CUA177
CUG64
Ile I7.3%
AUU176
AUC101
Met M3.9%
AUA83
AUG64
Val V6.1%
GUU74
GUC46
GUA82
GUG32
Ser S6.6%
UCU42
UCC68
UCA67
UCG14
AGU9
AGC52
Pro P5.7%
CCU35
CCC88
CCA78
CCG17
Thr T7.3%
ACU59
ACC88
ACA115
ACG16
Ala A9.4%
GCU78
GCC132
GCA133
GCG17
Tyr Y3.0%
UAU35
UAC78
His H2.5%
CAU26
CAC70
Gln Q2.6%
CAA83
CAG16
Asn N3.3%
AAU42
AAC83
Lys K2.0%
AAA56
AAG19
Asp D2.0%
GAU26
GAC52
Glu E2.5%
GAA61
GAG34
Cys C0.9%
UGU14
UGC19
Trp W2.9%
UGA92
UGG20
Arg R2.1%
CGU11
CGC28
CGA29
CGG14
Gly G6.4%
GGU35
GGC87
GGA65
GGG58
Stop 0.3%
UAA6
UAG3
AGA1
AGG0
Genome map
38 annotated features in NC_006131.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,011 | 943 bp | + | 46.6% |
| tRNA-Val | Transfer RNA | 1,013 | 1,084 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,086 | 2,769 | 1,684 bp | + | 45.1% |
| tRNA-Leu (UUR) | Transfer RNA | 2,770 | 2,843 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,844 | 3,818 | 975 bp | + | 46.8% |
| tRNA-Ile | Transfer RNA | 3,822 | 3,891 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,891 | 3,961 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,961 | 4,029 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,030 | 5,076 | 1,047 bp | + | 46.9% |
| tRNA-Trp | Transfer RNA | 5,076 | 5,147 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,150 | 5,219 | 70 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,223 | 5,296 | 74 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,330 | 5,396 | 67 bp | + | – |
| tRNA-Tyr | Transfer RNA | 5,397 | 5,467 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,469 | 7,028 | 1,560 bp | + | 45.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,024 | 7,094 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,098 | 7,168 | 71 bp | + | – |
| COX2 | Protein-coding gene | 7,171 | 7,869 | 699 bp | + | 46.8% |
| tRNA-Lys | Transfer RNA | 7,862 | 7,937 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,939 | 8,106 | 168 bp | + | 42.9% |
| ATP6 | Protein-coding gene | 8,097 | 8,780 | 684 bp | + | 42.8% |
| COX3 | Protein-coding gene | 8,780 | 9,564 | 785 bp | + | 47.1% |
| tRNA-Gly | Transfer RNA | 9,565 | 9,635 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,636 | 9,986 | 351 bp | + | 42.7% |
| tRNA-Arg | Transfer RNA | 9,986 | 10,053 | 68 bp | + | – |
| ND4L | Protein-coding gene | 10,054 | 10,350 | 297 bp | + | 48.5% |
| ND4 | Protein-coding gene | 10,344 | 11,724 | 1,381 bp | + | 47.0% |
| tRNA-His | Transfer RNA | 11,725 | 11,793 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,794 | 11,861 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,867 | 11,939 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,940 | 13,781 | 1,842 bp | + | 44.7% |
| ND6 | Protein-coding gene | 13,774 | 14,295 | 522 bp | − | 48.7% |
| tRNA-Glu | Transfer RNA | 14,296 | 14,364 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,369 | 15,509 | 1,141 bp | + | 45.8% |
| tRNA-Thr | Transfer RNA | 15,510 | 15,581 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,611 | 15,679 | 69 bp | + | – |
| D-loop | Control region | 15,680 | 16,663 | 984 bp | – | 35.3% |