Acanthopagrus latus
Yellowfin seabream
GC content
44.79%
Whole genome
Non-coding
1,024 bp
D-loop 948 bp
Where Yellowfin seabream sits among 2,335 species
Whole-genome GC content against maximum lifespan. Yellowfin seabream has the 1,287th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,635 bp
- GC skew (G − C) / (G + C)
- −0.253
- AT skew (A − T) / (A + T)
- −0.003
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,635 bp
Protein-coding11,422 bp
12S rRNA953 bp
16S rRNA1,693 bp
All tRNA1,556 bp
D-loop948 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.28% | −0.354 | −0.125 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 48.18% | −0.433 | −0.074 | |||||
| COX1Cytochrome c oxidase subunit I | 1,566 bp | 44.38% | −0.151 | −0.137 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.42% | −0.187 | −0.018 | |||||
| ATP8ATP synthase F0 subunit 8 | 165 bp | 48.49% | −0.450 | +0.059 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 45.18% | −0.411 | −0.131 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.22% | −0.200 | −0.130 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 44.99% | −0.401 | −0.188 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.82% | −0.421 | −0.158 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 45.55% | −0.316 | −0.048 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 43.77% | −0.381 | +0.014 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.64% | −0.339 | +0.370 | |||||
| CYTBCytochrome b | 1,141 bp | 44.79% | −0.315 | −0.095 | |||||
| 12S rRNA12S ribosomal RNA | 953 bp | 47.01% | −0.036 | +0.121 | |||||
| 16S rRNA16S ribosomal RNA | 1,693 bp | 43.77% | −0.066 | +0.212 | |||||
| D-loopControl region (D-loop) | 948 bp | 35.97% | −0.179 | −0.002 |
Codon usage
Counts per codon, darker is more frequent3,811 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU103
UUC134
Leu L17.6%
UUA100
UUG26
CUU162
CUC180
CUA150
CUG54
Ile I7.1%
AUU179
AUC90
Met M4.1%
AUA94
AUG64
Val V6.0%
GUU76
GUC60
GUA69
GUG25
Ser S6.9%
UCU57
UCC79
UCA59
UCG9
AGU12
AGC46
Pro P5.6%
CCU56
CCC88
CCA60
CCG10
Thr T7.4%
ACU67
ACC97
ACA103
ACG14
Ala A8.9%
GCU78
GCC135
GCA108
GCG18
Tyr Y2.8%
UAU52
UAC55
His H2.8%
CAU39
CAC68
Gln Q2.5%
CAA85
CAG11
Asn N3.0%
AAU45
AAC68
Lys K2.0%
AAA63
AAG15
Asp D2.0%
GAU26
GAC50
Glu E2.7%
GAA79
GAG22
Cys C0.7%
UGU8
UGC17
Trp W3.1%
UGA104
UGG15
Arg R2.0%
CGU9
CGC18
CGA41
CGG8
Gly G6.4%
GGU53
GGC74
GGA77
GGG40
Stop 0.2%
UAA3
UAG3
AGA0
AGG1
Genome map
38 annotated features in NC_056780.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,021 | 953 bp | + | 47.0% |
| tRNA-Val | Transfer RNA | 1,022 | 1,093 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,094 | 2,786 | 1,693 bp | + | 43.8% |
| tRNA-Leu (UUR) | Transfer RNA | 2,787 | 2,860 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,861 | 3,835 | 975 bp | + | 47.3% |
| tRNA-Ile | Transfer RNA | 3,840 | 3,909 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,909 | 3,979 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,979 | 4,048 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,049 | 5,094 | 1,046 bp | + | 48.2% |
| tRNA-Trp | Transfer RNA | 5,095 | 5,165 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,166 | 5,234 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,238 | 5,310 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,341 | 5,407 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,408 | 5,477 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,479 | 7,044 | 1,566 bp | + | 44.4% |
| tRNA-Ser (UCN) | Transfer RNA | 7,032 | 7,102 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,106 | 7,178 | 73 bp | + | – |
| COX2 | Protein-coding gene | 7,187 | 7,877 | 691 bp | + | 43.4% |
| tRNA-Lys | Transfer RNA | 7,878 | 7,951 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,953 | 8,117 | 165 bp | + | 48.5% |
| ATP6 | Protein-coding gene | 8,111 | 8,794 | 684 bp | + | 45.2% |
| COX3 | Protein-coding gene | 8,794 | 9,578 | 785 bp | + | 45.2% |
| tRNA-Gly | Transfer RNA | 9,579 | 9,650 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,651 | 9,999 | 349 bp | + | 45.0% |
| tRNA-Arg | Transfer RNA | 10,000 | 10,071 | 72 bp | + | – |
| ND4L | Protein-coding gene | 10,072 | 10,368 | 297 bp | + | 48.8% |
| ND4 | Protein-coding gene | 10,362 | 11,742 | 1,381 bp | + | 45.6% |
| tRNA-His | Transfer RNA | 11,743 | 11,811 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,812 | 11,879 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,901 | 11,973 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,975 | 13,813 | 1,839 bp | + | 43.8% |
| ND6 | Protein-coding gene | 13,810 | 14,331 | 522 bp | − | 44.6% |
| tRNA-Glu | Transfer RNA | 14,332 | 14,400 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,405 | 15,545 | 1,141 bp | + | 44.8% |
| tRNA-Thr | Transfer RNA | 15,546 | 15,617 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,617 | 15,687 | 71 bp | − | – |
| D-loop | Control region | 15,688 | 16,635 | 948 bp | – | 36.0% |