Acentrogobius pflaumii
Striped sandgoby
GC content
47.66%
Whole genome
Non-coding
933 bp
D-loop 857 bp
Where Striped sandgoby sits among 2,335 species
Whole-genome GC content against maximum lifespan. Striped sandgoby has the 2,148th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,515 bp
- GC skew (G − C) / (G + C)
- −0.231
- AT skew (A − T) / (A + T)
- +0.015
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,515 bp
Protein-coding11,408 bp
12S rRNA947 bp
16S rRNA1,673 bp
All tRNA1,554 bp
D-loop857 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 50.77% | −0.265 | −0.104 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 51.39% | −0.397 | −0.039 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 48.10% | −0.182 | −0.071 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 46.45% | −0.234 | +0.032 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 47.02% | −0.418 | +0.079 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 48.10% | −0.325 | −0.099 | |||||
| COX3Cytochrome c oxidase subunit III | 784 bp | 48.60% | −0.228 | −0.047 | |||||
| ND3NADH dehydrogenase subunit 3 | 351 bp | 50.43% | −0.266 | −0.264 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 53.54% | −0.371 | −0.130 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 48.88% | −0.316 | −0.040 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,838 bp | 46.52% | −0.322 | −0.044 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 49.04% | −0.258 | +0.376 | |||||
| CYTBCytochrome b | 1,141 bp | 46.19% | −0.260 | −0.114 | |||||
| 12S rRNA12S ribosomal RNA | 947 bp | 49.53% | −0.079 | +0.213 | |||||
| 16S rRNA16S ribosomal RNA | 1,673 bp | 45.91% | −0.091 | +0.222 | |||||
| D-loopControl region (D-loop) | 857 bp | 38.86% | −0.171 | +0.034 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU110
UUC127
Leu L17.6%
UUA85
UUG42
CUU167
CUC150
CUA141
CUG85
Ile I7.0%
AUU143
AUC123
Met M4.2%
AUA71
AUG88
Val V5.5%
GUU44
GUC64
GUA68
GUG34
Ser S6.3%
UCU51
UCC65
UCA50
UCG18
AGU5
AGC52
Pro P5.9%
CCU50
CCC101
CCA47
CCG27
Thr T7.9%
ACU47
ACC114
ACA119
ACG19
Ala A9.4%
GCU53
GCC170
GCA100
GCG33
Tyr Y3.0%
UAU34
UAC81
His H2.7%
CAU22
CAC80
Gln Q2.7%
CAA64
CAG39
Asn N3.1%
AAU42
AAC75
Lys K1.9%
AAA47
AAG26
Asp D1.9%
GAU14
GAC59
Glu E2.5%
GAA64
GAG32
Cys C0.7%
UGU9
UGC17
Trp W3.0%
UGA83
UGG32
Arg R2.0%
CGU5
CGC16
CGA44
CGG11
Gly G6.3%
GGU24
GGC85
GGA67
GGG65
Stop 0.2%
UAA4
UAG3
AGA0
AGG0
Genome map
38 annotated features in NC_018064.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (47.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,016 | 947 bp | + | 49.5% |
| tRNA-Val | Transfer RNA | 1,017 | 1,087 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,088 | 2,760 | 1,673 bp | + | 45.9% |
| tRNA-Leu (UUR) | Transfer RNA | 2,761 | 2,835 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,836 | 3,810 | 975 bp | + | 50.8% |
| tRNA-Ile | Transfer RNA | 3,814 | 3,883 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,883 | 3,953 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,953 | 4,023 | 71 bp | + | – |
| ND2 | Protein-coding gene | 4,024 | 5,068 | 1,045 bp | + | 51.4% |
| tRNA-Trp | Transfer RNA | 5,069 | 5,139 | 71 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,141 | 5,209 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,211 | 5,283 | 73 bp | + | – |
| tRNA-Cys | Transfer RNA | 5,316 | 5,384 | 69 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,384 | 5,454 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,456 | 7,006 | 1,551 bp | + | 48.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,010 | 7,078 | 69 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,083 | 7,154 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,157 | 7,847 | 691 bp | + | 46.5% |
| tRNA-Lys | Transfer RNA | 7,848 | 7,923 | 76 bp | + | – |
| ATP8 | Protein-coding gene | 7,925 | 8,092 | 168 bp | + | 47.0% |
| ATP6 | Protein-coding gene | 8,083 | 8,766 | 684 bp | + | 48.1% |
| COX3 | Protein-coding gene | 8,770 | 9,553 | 784 bp | + | 48.6% |
| tRNA-Gly | Transfer RNA | 9,554 | 9,623 | 70 bp | + | – |
| ND3 | Protein-coding gene | 9,624 | 9,974 | 351 bp | + | 50.4% |
| tRNA-Arg | Transfer RNA | 9,994 | 10,062 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,063 | 10,359 | 297 bp | + | 53.5% |
| ND4 | Protein-coding gene | 10,353 | 11,733 | 1,381 bp | + | 48.9% |
| tRNA-His | Transfer RNA | 11,734 | 11,802 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,802 | 11,871 | 70 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,873 | 11,945 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,946 | 13,783 | 1,838 bp | + | 46.5% |
| ND6 | Protein-coding gene | 13,781 | 14,302 | 522 bp | − | 49.0% |
| tRNA-Glu | Transfer RNA | 14,303 | 14,371 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,377 | 15,517 | 1,141 bp | + | 46.2% |
| tRNA-Thr | Transfer RNA | 15,518 | 15,589 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,589 | 15,658 | 70 bp | − | – |
| D-loop | Control region | 15,659 | 16,515 | 857 bp | – | 38.9% |