MitoAge

Acipenser brevirostrum

Shortnose sturgeon

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Maximum lifespan
67 yr
AnAge record
mtDNA size
16,680 bp
RefSeq NC_032715.1
GC content
45.54%
Whole genome
Non-coding
1,047 bp
D-loop 964 bp

Where Shortnose sturgeon sits among 2,335 species

Whole-genome GC content against maximum lifespan. Shortnose sturgeon has the 73rd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Shortnose sturgeon
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,680 bp
GC skew (G − C) / (G + C)
−0.284
AT skew (A − T) / (A + T)
+0.111

Life history

Maximum lifespan
67 years
Adult weight
9.3 kg
Female sexual maturity
15.5 years
Gestation or incubation
13 days
Litter or clutch size
120,000

Lifespan from AnAge · AnAge record · other traits from AnAge build 15 (HAGRID 01864)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
New in build 2
In the database since
build 2 (2026-11-13)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,680 bp
Protein-coding11,412 bp
12S rRNA959 bp
16S rRNA1,702 bp
All tRNA1,560 bp
D-loop964 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp28.6%25.6%14.2%31.6%45.74%−0.381+0.055
ND2NADH dehydrogenase subunit 21,045 bp32.9%21.5%12.2%33.3%45.55%−0.462+0.209
COX1Cytochrome c oxidase subunit I1,554 bp24.5%28.2%19.5%27.8%47.30%−0.176−0.072
COX2Cytochrome c oxidase subunit II691 bp30.8%25.2%17.1%26.9%43.99%−0.224+0.101
ATP8ATP synthase F0 subunit 8168 bp32.7%26.2%11.3%29.8%41.07%−0.449+0.111
ATP6ATP synthase F0 subunit 6684 bp27.0%26.0%13.2%33.8%46.93%−0.439+0.019
COX3Cytochrome c oxidase subunit III785 bp26.4%25.7%17.5%30.4%47.90%−0.271+0.012
ND3NADH dehydrogenase subunit 3349 bp24.1%28.7%16.3%30.9%47.28%−0.309−0.087
ND4LNADH dehydrogenase subunit 4L297 bp24.2%24.6%14.8%36.4%51.18%−0.421−0.007
ND4NADH dehydrogenase subunit 41,381 bp29.1%24.2%15.1%31.6%46.71%−0.352+0.092
ND5NADH dehydrogenase subunit 51,842 bp30.8%24.1%12.9%32.2%45.06%−0.429+0.123
ND6NADH dehydrogenase subunit 6522 bp41.4%12.3%11.7%34.7%46.36%−0.496+0.543
CYTBCytochrome b1,141 bp27.1%26.2%15.2%31.6%46.71%−0.351+0.016
12S rRNA12S ribosomal RNA959 bp32.3%19.0%21.5%27.2%48.70%−0.118+0.260
16S rRNA16S ribosomal RNA1,702 bp35.8%19.9%20.0%24.4%44.36%−0.099+0.286
D-loopControl region (D-loop)964 bp33.1%30.2%13.6%23.1%36.72%−0.260+0.046

Codon usage

Counts per codon, darker is more frequent

3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.8%
UUU100
UUC120
Leu L16.5%
UUA80
UUG24
CUU80
CUC126
CUA259
CUG61
Ile I7.5%
AUU144
AUC141
Met M4.6%
AUA114
AUG62
Val V5.8%
GUU42
GUC50
GUA89
GUG41
Ser S6.1%
UCU30
UCC81
UCA60
UCG10
AGU9
AGC41
Pro P5.6%
CCU26
CCC95
CCA82
CCG12
Thr T8.2%
ACU37
ACC138
ACA127
ACG9
Ala A8.8%
GCU41
GCC172
GCA106
GCG18
Tyr Y3.1%
UAU44
UAC74
His H2.7%
CAU22
CAC80
Gln Q2.7%
CAA97
CAG7
Asn N3.4%
AAU29
AAC102
Lys K2.1%
AAA70
AAG9
Asp D2.0%
GAU16
GAC59
Glu E2.7%
GAA84
GAG17
Cys C0.7%
UGU11
UGC17
Trp W3.1%
UGA100
UGG19
Arg R2.0%
CGU4
CGC15
CGA49
CGG7
Gly G6.4%
GGU27
GGC83
GGA90
GGG43
Stop 0.2%
UAA5
UAG2
AGA0
AGG0

Genome map

38 annotated features in NC_032715.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (45.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,027959 bp+48.7%
tRNA-ValTransfer RNA1,0281,09871 bp+–
16S rRNARibosomal RNA1,0992,8001,702 bp+44.4%
tRNA-Leu (UUR)Transfer RNA2,8022,87675 bp+–
ND1Protein-coding gene2,8773,851975 bp+45.7%
tRNA-IleTransfer RNA3,8613,93171 bp+–
tRNA-GlnTransfer RNA3,9314,00171 bp−–
tRNA-MetTransfer RNA4,0014,07070 bp+–
ND2Protein-coding gene4,0715,1151,045 bp+45.6%
tRNA-TrpTransfer RNA5,1165,18873 bp+–
tRNA-AlaTransfer RNA5,1915,25969 bp−–
tRNA-AsnTransfer RNA5,2615,33373 bp−–
tRNA-CysTransfer RNA5,3685,43467 bp−–
tRNA-TyrTransfer RNA5,4355,50571 bp−–
COX1Protein-coding gene5,5077,0601,554 bp+47.3%
tRNA-Ser (UCN)Transfer RNA7,0687,13871 bp−–
tRNA-AspTransfer RNA7,1477,21872 bp+–
COX2Protein-coding gene7,2337,923691 bp+44.0%
tRNA-LysTransfer RNA7,9247,99774 bp+–
ATP8Protein-coding gene7,9998,166168 bp+41.1%
ATP6Protein-coding gene8,1578,840684 bp+46.9%
COX3Protein-coding gene8,8409,624785 bp+47.9%
tRNA-GlyTransfer RNA9,6259,69773 bp+–
ND3Protein-coding gene9,69810,046349 bp+47.3%
tRNA-ArgTransfer RNA10,04710,11670 bp+–
ND4LProtein-coding gene10,11710,413297 bp+51.2%
ND4Protein-coding gene10,40711,7871,381 bp+46.7%
tRNA-HisTransfer RNA11,78811,85669 bp+–
tRNA-Ser (AGY)Transfer RNA11,85711,92468 bp+–
tRNA-Leu (CUN)Transfer RNA11,92511,99773 bp+–
ND5Protein-coding gene11,99813,8391,842 bp+45.1%
ND6Protein-coding gene13,83614,357522 bp−46.4%
tRNA-GluTransfer RNA14,35814,42770 bp−–
CYTBProtein-coding gene14,43015,5701,141 bp+46.7%
tRNA-ThrTransfer RNA15,57115,64373 bp+–
tRNA-ProTransfer RNA15,64715,71670 bp−–
D-loopControl region15,71716,680964 bp–36.7%

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