Acipenser dabryanus
Yangtze sturgeon
GC content
46.10%
Whole genome
Non-coding
808 bp
D-loop 726 bp
Where Yangtze sturgeon sits among 2,335 species
Whole-genome GC content against maximum lifespan. Yangtze sturgeon has the 28th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,438 bp
- GC skew (G − C) / (G + C)
- −0.287
- AT skew (A − T) / (A + T)
- +0.120
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,438 bp
Protein-coding11,413 bp
12S rRNA960 bp
16S rRNA1,701 bp
All tRNA1,557 bp
D-loop726 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.18% | −0.396 | +0.052 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 46.60% | −0.437 | +0.190 | |||||
| COX1Cytochrome c oxidase subunit I | 1,554 bp | 48.01% | −0.193 | −0.054 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 45.88% | −0.205 | +0.096 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 39.88% | −0.522 | +0.168 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 47.95% | −0.451 | +0.034 | |||||
| COX3Cytochrome c oxidase subunit III | 786 bp | 48.35% | −0.295 | +0.039 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 47.56% | −0.337 | −0.049 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.51% | −0.400 | −0.020 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.78% | −0.359 | +0.088 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,842 bp | 45.39% | −0.426 | +0.123 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.32% | −0.506 | +0.571 | |||||
| CYTBCytochrome b | 1,141 bp | 46.10% | −0.357 | +0.024 | |||||
| 12S rRNA12S ribosomal RNA | 960 bp | 49.27% | −0.125 | +0.269 | |||||
| 16S rRNA16S ribosomal RNA | 1,701 bp | 44.33% | −0.109 | +0.299 | |||||
| D-loopControl region (D-loop) | 726 bp | 38.15% | −0.170 | +0.074 |
Codon usage
Counts per codon, darker is more frequent3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.8%
UUU95
UUC126
Leu L16.5%
UUA79
UUG24
CUU78
CUC134
CUA242
CUG70
Ile I7.6%
AUU139
AUC150
Met M4.5%
AUA114
AUG59
Val V5.6%
GUU33
GUC55
GUA79
GUG47
Ser S6.1%
UCU32
UCC78
UCA68
UCG6
AGU11
AGC39
Pro P5.6%
CCU26
CCC96
CCA85
CCG8
Thr T8.4%
ACU33
ACC146
ACA126
ACG14
Ala A8.8%
GCU39
GCC173
GCA104
GCG20
Tyr Y3.1%
UAU44
UAC73
His H2.7%
CAU17
CAC86
Gln Q2.7%
CAA91
CAG13
Asn N3.3%
AAU25
AAC100
Lys K2.1%
AAA74
AAG5
Asp D2.0%
GAU15
GAC61
Glu E2.7%
GAA84
GAG17
Cys C0.8%
UGU10
UGC19
Trp W3.1%
UGA99
UGG21
Arg R1.9%
CGU7
CGC13
CGA49
CGG5
Gly G6.5%
GGU22
GGC88
GGA95
GGG41
Stop 0.2%
UAA5
UAG3
AGA0
AGG0
Genome map
38 annotated features in NC_005451.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.1%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,028 | 960 bp | + | 49.3% |
| tRNA-Val | Transfer RNA | 1,029 | 1,099 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,100 | 2,800 | 1,701 bp | + | 44.3% |
| tRNA-Leu (UUR) | Transfer RNA | 2,801 | 2,875 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,876 | 3,850 | 975 bp | + | 47.2% |
| tRNA-Ile | Transfer RNA | 3,860 | 3,930 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,930 | 4,000 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,000 | 4,069 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,070 | 5,114 | 1,045 bp | + | 46.6% |
| tRNA-Trp | Transfer RNA | 5,115 | 5,187 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,189 | 5,257 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,259 | 5,331 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,364 | 5,430 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,431 | 5,501 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,503 | 7,056 | 1,554 bp | + | 48.0% |
| tRNA-Ser (UCN) | Transfer RNA | 7,064 | 7,134 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,143 | 7,214 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,229 | 7,919 | 691 bp | + | 45.9% |
| tRNA-Lys | Transfer RNA | 7,920 | 7,993 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,995 | 8,162 | 168 bp | + | 39.9% |
| ATP6 | Protein-coding gene | 8,153 | 8,836 | 684 bp | + | 48.0% |
| COX3 | Protein-coding gene | 8,836 | 9,621 | 786 bp | + | 48.4% |
| tRNA-Gly | Transfer RNA | 9,621 | 9,693 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,694 | 10,042 | 349 bp | + | 47.6% |
| tRNA-Arg | Transfer RNA | 10,043 | 10,112 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,113 | 10,409 | 297 bp | + | 50.5% |
| ND4 | Protein-coding gene | 10,403 | 11,783 | 1,381 bp | + | 46.8% |
| tRNA-His | Transfer RNA | 11,784 | 11,852 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,853 | 11,920 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,921 | 11,993 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,994 | 13,835 | 1,842 bp | + | 45.4% |
| ND6 | Protein-coding gene | 13,832 | 14,353 | 522 bp | − | 47.3% |
| tRNA-Glu | Transfer RNA | 14,354 | 14,423 | 70 bp | − | – |
| CYTB | Protein-coding gene | 14,426 | 15,566 | 1,141 bp | + | 46.1% |
| tRNA-Thr | Transfer RNA | 15,567 | 15,636 | 70 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,643 | 15,712 | 70 bp | − | – |
| D-loop | Control region | 15,713 | 16,438 | 726 bp | – | 38.2% |