Acipenser medirostris
Green sturgeon
GC content
45.47%
Whole genome
Non-coding
978 bp
D-loop 899 bp
Where Green sturgeon sits among 2,335 species
Whole-genome GC content against maximum lifespan. Green sturgeon has the 92nd longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,611 bp
- GC skew (G − C) / (G + C)
- −0.279
- AT skew (A − T) / (A + T)
- +0.106
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,611 bp
Protein-coding11,412 bp
12S rRNA961 bp
16S rRNA1,701 bp
All tRNA1,559 bp
D-loop899 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.15% | −0.396 | +0.063 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 44.69% | −0.426 | +0.156 | |||||
| COX1Cytochrome c oxidase subunit I | 1,554 bp | 47.30% | −0.173 | −0.074 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 44.57% | −0.214 | +0.097 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 41.07% | −0.420 | +0.111 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 47.66% | −0.423 | +0.022 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 46.88% | −0.288 | +0.026 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 48.71% | −0.259 | −0.117 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.51% | −0.400 | −0.034 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 45.40% | −0.352 | +0.077 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,842 bp | 44.08% | −0.426 | +0.113 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 48.85% | −0.475 | +0.581 | |||||
| CYTBCytochrome b | 1,141 bp | 46.89% | −0.353 | +0.020 | |||||
| 12S rRNA12S ribosomal RNA | 961 bp | 49.22% | −0.121 | +0.254 | |||||
| 16S rRNA16S ribosomal RNA | 1,701 bp | 44.44% | −0.114 | +0.299 | |||||
| D-loopControl region (D-loop) | 899 bp | 36.93% | −0.205 | +0.026 |
Codon usage
Counts per codon, darker is more frequent3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F5.8%
UUU102
UUC120
Leu L16.5%
UUA90
UUG23
CUU80
CUC129
CUA235
CUG72
Ile I7.5%
AUU149
AUC135
Met M4.6%
AUA120
AUG57
Val V5.9%
GUU47
GUC48
GUA86
GUG44
Ser S6.1%
UCU33
UCC78
UCA60
UCG10
AGU9
AGC41
Pro P5.6%
CCU27
CCC96
CCA83
CCG9
Thr T8.3%
ACU36
ACC141
ACA123
ACG16
Ala A8.6%
GCU38
GCC168
GCA104
GCG19
Tyr Y3.0%
UAU46
UAC70
His H2.7%
CAU19
CAC84
Gln Q2.7%
CAA93
CAG11
Asn N3.5%
AAU32
AAC100
Lys K2.1%
AAA74
AAG5
Asp D1.9%
GAU18
GAC56
Glu E2.7%
GAA81
GAG20
Cys C0.8%
UGU12
UGC17
Trp W3.2%
UGA101
UGG19
Arg R1.9%
CGU7
CGC10
CGA51
CGG6
Gly G6.4%
GGU28
GGC81
GGA87
GGG46
Stop 0.2%
UAA5
UAG2
AGA0
AGG0
Genome map
38 annotated features in NC_028405.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,029 | 961 bp | + | 49.2% |
| tRNA-Val | Transfer RNA | 1,030 | 1,100 | 71 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,101 | 2,801 | 1,701 bp | + | 44.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,802 | 2,875 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,876 | 3,850 | 975 bp | + | 46.2% |
| tRNA-Ile | Transfer RNA | 3,860 | 3,930 | 71 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,930 | 4,000 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,000 | 4,069 | 70 bp | + | – |
| ND2 | Protein-coding gene | 4,070 | 5,114 | 1,045 bp | + | 44.7% |
| tRNA-Trp | Transfer RNA | 5,115 | 5,187 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,189 | 5,257 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,259 | 5,331 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,364 | 5,430 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,431 | 5,501 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,503 | 7,056 | 1,554 bp | + | 47.3% |
| tRNA-Ser (UCN) | Transfer RNA | 7,064 | 7,134 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,143 | 7,214 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,229 | 7,919 | 691 bp | + | 44.6% |
| tRNA-Lys | Transfer RNA | 7,920 | 7,993 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,995 | 8,162 | 168 bp | + | 41.1% |
| ATP6 | Protein-coding gene | 8,153 | 8,836 | 684 bp | + | 47.7% |
| COX3 | Protein-coding gene | 8,836 | 9,620 | 785 bp | + | 46.9% |
| tRNA-Gly | Transfer RNA | 9,621 | 9,693 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,694 | 10,042 | 349 bp | + | 48.7% |
| tRNA-Arg | Transfer RNA | 10,043 | 10,112 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,113 | 10,409 | 297 bp | + | 50.5% |
| ND4 | Protein-coding gene | 10,403 | 11,783 | 1,381 bp | + | 45.4% |
| tRNA-His | Transfer RNA | 11,784 | 11,852 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,853 | 11,920 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,921 | 11,993 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,994 | 13,835 | 1,842 bp | + | 44.1% |
| ND6 | Protein-coding gene | 13,832 | 14,353 | 522 bp | − | 48.9% |
| tRNA-Glu | Transfer RNA | 14,354 | 14,423 | 70 bp | − | – |
| CYTB | Protein-coding gene | 14,426 | 15,566 | 1,141 bp | + | 46.9% |
| tRNA-Thr | Transfer RNA | 15,567 | 15,639 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,643 | 15,712 | 70 bp | − | – |
| D-loop | Control region | 15,713 | 16,611 | 899 bp | – | 36.9% |