MitoAge

Acipenser schrenckii

Amur sturgeon

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Maximum lifespan
60 yr
AnAge record
mtDNA size
16,684 bp
RefSeq NC_021757.1
GC content
45.80%
Whole genome
Non-coding
1,061 bp
D-loop 971 bp

Where Amur sturgeon sits among 2,335 species

Whole-genome GC content against maximum lifespan. Amur sturgeon has the 88th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Amur sturgeon
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,684 bp
GC skew (G − C) / (G + C)
−0.282
AT skew (A − T) / (A + T)
+0.110

Life history

Maximum lifespan
60 years
Adult weight
104.5 kg
Female sexual maturity
12.5 years
Male sexual maturity
9 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01870)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,684 bp
Protein-coding11,412 bp
12S rRNA961 bp
16S rRNA1,701 bp
All tRNA1,549 bp
D-loop971 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp28.0%25.8%14.4%31.8%46.15%−0.378+0.040
ND2NADH dehydrogenase subunit 21,045 bp31.6%22.1%13.1%33.2%46.32%−0.434+0.176
COX1Cytochrome c oxidase subunit I1,554 bp24.7%27.0%19.3%29.0%48.26%−0.200−0.045
COX2Cytochrome c oxidase subunit II691 bp30.8%24.3%16.9%27.9%44.86%−0.245+0.118
ATP8ATP synthase F0 subunit 8168 bp33.3%26.2%11.3%29.2%40.48%−0.441+0.120
ATP6ATP synthase F0 subunit 6684 bp26.8%25.3%13.5%34.5%47.95%−0.439+0.028
COX3Cytochrome c oxidase subunit III785 bp27.0%25.1%16.9%31.0%47.90%−0.293+0.037
ND3NADH dehydrogenase subunit 3349 bp22.9%28.9%17.8%30.4%48.14%−0.262−0.116
ND4LNADH dehydrogenase subunit 4L297 bp24.9%25.6%14.1%35.4%49.50%−0.429−0.013
ND4NADH dehydrogenase subunit 41,381 bp28.9%24.5%15.2%31.4%46.56%−0.347+0.081
ND5NADH dehydrogenase subunit 51,842 bp30.8%23.8%12.8%32.6%45.39%−0.435+0.127
ND6NADH dehydrogenase subunit 6522 bp41.0%11.3%12.1%35.6%47.70%−0.494+0.568
CYTBCytochrome b1,141 bp27.7%26.3%14.5%31.5%46.01%−0.368+0.026
12S rRNA12S ribosomal RNA961 bp31.9%18.6%21.5%27.9%49.43%−0.128+0.263
16S rRNA16S ribosomal RNA1,701 bp36.2%19.8%19.8%24.3%44.09%−0.104+0.293
D-loopControl region (D-loop)971 bp31.0%32.2%16.1%20.7%36.77%−0.126−0.020

Codon usage

Counts per codon, darker is more frequent

3,809 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.8%
UUU99
UUC122
Leu L16.5%
UUA86
UUG23
CUU78
CUC135
CUA238
CUG68
Ile I7.6%
AUU130
AUC158
Met M4.6%
AUA119
AUG56
Val V5.7%
GUU34
GUC55
GUA87
GUG42
Ser S6.2%
UCU33
UCC81
UCA65
UCG7
AGU10
AGC40
Pro P5.6%
CCU25
CCC94
CCA83
CCG12
Thr T8.2%
ACU35
ACC138
ACA125
ACG13
Ala A8.8%
GCU37
GCC171
GCA111
GCG17
Tyr Y3.1%
UAU45
UAC72
His H2.7%
CAU18
CAC85
Gln Q2.7%
CAA90
CAG14
Asn N3.4%
AAU30
AAC101
Lys K2.1%
AAA69
AAG10
Asp D1.9%
GAU17
GAC57
Glu E2.7%
GAA84
GAG17
Cys C0.8%
UGU8
UGC21
Trp W3.2%
UGA100
UGG20
Arg R2.0%
CGU5
CGC16
CGA47
CGG7
Gly G6.4%
GGU25
GGC86
GGA86
GGG45
Stop 0.2%
UAA5
UAG2
AGA0
AGG0

Genome map

38 annotated features in NC_021757.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (45.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,029961 bp+49.4%
tRNA-ValTransfer RNA1,0301,10071 bp+–
16S rRNARibosomal RNA1,1012,8011,701 bp+44.1%
tRNA-Leu (UUR)Transfer RNA2,8022,87675 bp+–
ND1Protein-coding gene2,8773,851975 bp+46.2%
tRNA-IleTransfer RNA3,8613,93171 bp+–
tRNA-GlnTransfer RNA3,9314,00171 bp−–
tRNA-MetTransfer RNA4,0014,07070 bp+–
ND2Protein-coding gene4,0715,1151,045 bp+46.3%
tRNA-TrpTransfer RNA5,1165,18873 bp+–
tRNA-AlaTransfer RNA5,1905,25869 bp−–
tRNA-AsnTransfer RNA5,2605,33273 bp−–
tRNA-CysTransfer RNA5,3655,43167 bp−–
tRNA-TyrTransfer RNA5,4325,50271 bp−–
COX1Protein-coding gene5,5047,0571,554 bp+48.3%
tRNA-Ser (UCN)Transfer RNA7,0657,13571 bp−–
tRNA-AspTransfer RNA7,1437,21674 bp+–
COX2Protein-coding gene7,2307,920691 bp+44.9%
tRNA-LysTransfer RNA7,9217,99474 bp+–
ATP8Protein-coding gene7,9968,163168 bp+40.5%
ATP6Protein-coding gene8,1548,837684 bp+48.0%
COX3Protein-coding gene8,8379,621785 bp+47.9%
tRNA-GlyTransfer RNA9,6229,69473 bp+–
ND3Protein-coding gene9,69510,043349 bp+48.1%
tRNA-ArgTransfer RNA10,04410,11370 bp+–
ND4LProtein-coding gene10,11410,410297 bp+49.5%
ND4Protein-coding gene10,40411,7841,381 bp+46.6%
tRNA-HisTransfer RNA11,78511,85369 bp+–
tRNA-Ser (AGY)Transfer RNA11,85411,90956 bp+–
tRNA-Leu (CUN)Transfer RNA11,92211,99473 bp+–
ND5Protein-coding gene11,99513,8361,842 bp+45.4%
ND6Protein-coding gene13,83314,354522 bp−47.7%
tRNA-GluTransfer RNA14,35514,42470 bp−–
CYTBProtein-coding gene14,42715,5671,141 bp+46.0%
tRNA-ThrTransfer RNA15,56815,63972 bp+–
tRNA-ProTransfer RNA15,64415,71370 bp−–
D-loopControl region15,71416,684971 bp–36.8%

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