MitoAge

Acipenser transmontanus

White sturgeon

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Maximum lifespan
104 yr
AnAge record
mtDNA size
16,692 bp
RefSeq NC_004743.1
GC content
45.84%
Whole genome
Non-coding
1,070 bp
D-loop 979 bp

Where White sturgeon sits among 2,335 species

Whole-genome GC content against maximum lifespan. White sturgeon has the 25th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %White sturgeon
  • This species
  • Other ray-finned fishes
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,692 bp
GC skew (G − C) / (G + C)
−0.284
AT skew (A − T) / (A + T)
+0.113

Life history

Maximum lifespan
104 years
Adult weight
448.8 kg
Female sexual maturity
22.5 years
Male sexual maturity
16.5 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01873)

About this record

Lifespan source
AnAge build 15
Based on
an animal in the wild
Data quality
acceptable, medium sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,692 bp
Protein-coding11,412 bp
12S rRNA961 bp
16S rRNA1,701 bp
All tRNA1,548 bp
D-loop979 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1975 bp27.6%25.6%14.8%32.0%46.77%−0.368+0.037
ND2NADH dehydrogenase subunit 21,045 bp31.8%22.0%12.8%33.4%46.22%−0.445+0.181
COX1Cytochrome c oxidase subunit I1,554 bp24.9%26.9%19.2%29.0%48.20%−0.202−0.039
COX2Cytochrome c oxidase subunit II691 bp31.1%24.9%16.6%27.4%43.99%−0.243+0.111
ATP8ATP synthase F0 subunit 8168 bp32.7%25.6%11.9%29.8%41.67%−0.429+0.122
ATP6ATP synthase F0 subunit 6683 bp26.4%25.5%13.8%34.4%48.17%−0.429+0.017
COX3Cytochrome c oxidase subunit III785 bp27.1%25.1%16.8%31.0%47.77%−0.296+0.039
ND3NADH dehydrogenase subunit 3349 bp24.1%28.4%16.9%30.7%47.56%−0.289−0.082
ND4LNADH dehydrogenase subunit 4L297 bp24.9%25.6%14.1%35.4%49.50%−0.429−0.013
ND4NADH dehydrogenase subunit 41,381 bp28.8%24.5%15.2%31.5%46.71%−0.349+0.082
ND5NADH dehydrogenase subunit 51,842 bp30.7%24.0%12.9%32.4%45.28%−0.429+0.121
ND6NADH dehydrogenase subunit 6522 bp41.0%11.3%12.3%35.4%47.70%−0.486+0.568
CYTBCytochrome b1,141 bp27.5%26.0%14.6%31.8%46.45%−0.370+0.028
12S rRNA12S ribosomal RNA961 bp31.9%18.7%21.5%27.8%49.32%−0.127+0.261
16S rRNA16S ribosomal RNA1,701 bp36.0%19.6%19.8%24.5%44.33%−0.106+0.295
D-loopControl region (D-loop)979 bp32.5%30.8%15.2%21.5%36.67%−0.170+0.026

Codon usage

Counts per codon, darker is more frequent

3,808 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.8%
UUU97
UUC125
Leu L16.5%
UUA83
UUG22
CUU78
CUC135
CUA238
CUG72
Ile I7.6%
AUU135
AUC154
Met M4.6%
AUA119
AUG55
Val V5.7%
GUU33
GUC55
GUA85
GUG45
Ser S6.2%
UCU34
UCC79
UCA66
UCG6
AGU11
AGC41
Pro P5.6%
CCU26
CCC95
CCA81
CCG12
Thr T8.3%
ACU35
ACC140
ACA128
ACG12
Ala A8.7%
GCU38
GCC169
GCA108
GCG16
Tyr Y3.1%
UAU42
UAC75
His H2.7%
CAU17
CAC86
Gln Q2.7%
CAA90
CAG14
Asn N3.4%
AAU27
AAC103
Lys K2.1%
AAA69
AAG10
Asp D1.9%
GAU17
GAC57
Glu E2.7%
GAA83
GAG18
Cys C0.8%
UGU9
UGC20
Trp W3.2%
UGA100
UGG20
Arg R1.9%
CGU5
CGC14
CGA49
CGG6
Gly G6.4%
GGU25
GGC87
GGA87
GGG44
Stop 0.2%
UAA4
UAG2
AGA0
AGG0

Genome map

38 annotated features in NC_004743.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (45.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16868 bp+–
12S rRNARibosomal RNA691,029961 bp+49.3%
tRNA-ValTransfer RNA1,0301,10071 bp+–
16S rRNARibosomal RNA1,1012,8011,701 bp+44.3%
tRNA-Leu (UUR)Transfer RNA2,8022,87675 bp+–
ND1Protein-coding gene2,8773,851975 bp+46.8%
tRNA-IleTransfer RNA3,8613,93171 bp+–
tRNA-GlnTransfer RNA3,9314,00171 bp−–
tRNA-MetTransfer RNA4,0014,07070 bp+–
ND2Protein-coding gene4,0715,1151,045 bp+46.2%
tRNA-TrpTransfer RNA5,1165,18873 bp+–
tRNA-AlaTransfer RNA5,1905,25869 bp−–
tRNA-AsnTransfer RNA5,2605,33273 bp−–
tRNA-CysTransfer RNA5,3655,43167 bp−–
tRNA-TyrTransfer RNA5,4325,50271 bp−–
COX1Protein-coding gene5,5047,0571,554 bp+48.2%
tRNA-Ser (UCN)Transfer RNA7,0657,13571 bp−–
tRNA-AspTransfer RNA7,1447,21572 bp+–
COX2Protein-coding gene7,2307,920691 bp+44.0%
tRNA-LysTransfer RNA7,9217,99474 bp+–
ATP8Protein-coding gene7,9968,163168 bp+41.7%
ATP6Protein-coding gene8,1548,836683 bp+48.2%
COX3Protein-coding gene8,8379,621785 bp+47.8%
tRNA-GlyTransfer RNA9,6229,69473 bp+–
ND3Protein-coding gene9,69510,043349 bp+47.6%
tRNA-ArgTransfer RNA10,04410,11370 bp+–
ND4LProtein-coding gene10,11410,410297 bp+49.5%
ND4Protein-coding gene10,40411,7841,381 bp+46.7%
tRNA-HisTransfer RNA11,78511,85369 bp+–
tRNA-Ser (AGY)Transfer RNA11,85411,90956 bp+–
tRNA-Leu (CUN)Transfer RNA11,92211,99473 bp+–
ND5Protein-coding gene11,99513,8361,842 bp+45.3%
ND6Protein-coding gene13,83314,354522 bp−47.7%
tRNA-GluTransfer RNA14,35514,42470 bp−–
CYTBProtein-coding gene14,42715,5671,141 bp+46.5%
tRNA-ThrTransfer RNA15,56815,64073 bp+–
tRNA-ProTransfer RNA15,64415,71370 bp−–
D-loopControl region15,71416,692979 bp–36.7%

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