MitoAge

Acomys cahirinus

Spiny mouse

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Maximum lifespan
5.9 yr
AnAge record
mtDNA size
16,217 bp
RefSeq NC_020758.1
GC content
40.61%
Whole genome
Non-coding
894 bp
D-loop 838 bp

Where Spiny mouse sits among 2,335 species

Whole-genome GC content against maximum lifespan. Spiny mouse has the 1,953rd longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Spiny mouse
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,217 bp
GC skew (G − C) / (G + C)
−0.370
AT skew (A − T) / (A + T)
+0.125

Life history

Maximum lifespan
5.9 years
Adult weight
45.2 g
Birth weight
5.3 g
Basal metabolic rate
0.258 W
Body temperature
37.5 °C
Female sexual maturity
58 days
Male sexual maturity
59 days
Gestation or incubation
38 days
Litter or clutch size
3
Litters per year
3.5
Postnatal growth rate
0.0147 per day

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03014)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
high, large sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,217 bp
Protein-coding11,329 bp
12S rRNA946 bp
16S rRNA1,559 bp
All tRNA1,492 bp
D-loop838 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp30.1%27.0%11.2%31.7%42.93%−0.478+0.053
ND2NADH dehydrogenase subunit 21,037 bp35.6%23.3%7.9%33.2%41.08%−0.615+0.208
COX1Cytochrome c oxidase subunit I1,545 bp27.1%28.8%16.9%27.2%44.14%−0.235−0.031
COX2Cytochrome c oxidase subunit II684 bp32.7%25.7%14.0%27.5%41.52%−0.324+0.120
ATP8ATP synthase F0 subunit 8204 bp38.2%25.5%5.4%30.9%36.28%−0.703+0.200
ATP6ATP synthase F0 subunit 6681 bp31.0%28.2%10.1%30.7%40.82%−0.504+0.047
COX3Cytochrome c oxidase subunit III784 bp29.8%26.0%14.3%29.8%44.13%−0.353+0.068
ND3NADH dehydrogenase subunit 3348 bp30.5%28.2%10.9%30.5%41.38%−0.472+0.039
ND4LNADH dehydrogenase subunit 4L297 bp29.0%29.0%10.8%31.3%42.09%−0.4880.000
ND4NADH dehydrogenase subunit 41,372 bp35.3%25.6%9.6%29.5%39.14%−0.508+0.159
ND5NADH dehydrogenase subunit 51,833 bp32.7%26.0%10.5%30.8%41.30%−0.490+0.113
ND6NADH dehydrogenase subunit 6525 bp40.8%19.4%7.6%32.2%39.81%−0.617+0.354
CYTBCytochrome b1,141 bp30.5%27.6%12.8%29.1%41.89%−0.389+0.050
12S rRNA12S ribosomal RNA946 bp38.5%23.0%17.0%21.5%38.48%−0.115+0.251
16S rRNA16S ribosomal RNA1,559 bp38.5%22.7%17.2%21.6%38.81%−0.114+0.258
D-loopControl region (D-loop)838 bp31.1%31.4%11.9%25.5%37.47%−0.363−0.004

Codon usage

Counts per codon, darker is more frequent

3,800 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.6%
UUU90
UUC124
Leu L15.9%
UUA92
UUG16
CUU61
CUC114
CUA300
CUG22
Ile I9.3%
AUU154
AUC201
Met M6.3%
AUA208
AUG31
Val V4.4%
GUU23
GUC31
GUA91
GUG24
Ser S8.1%
UCU45
UCC88
UCA109
UCG4
AGU15
AGC46
Pro P5.4%
CCU29
CCC99
CCA69
CCG7
Thr T8.1%
ACU50
ACC121
ACA130
ACG8
Ala A6.3%
GCU47
GCC101
GCA92
GCG0
Tyr Y3.4%
UAU49
UAC82
His H2.9%
CAU20
CAC89
Gln Q2.1%
CAA74
CAG4
Asn N4.2%
AAU40
AAC121
Lys K2.7%
AAA96
AAG7
Asp D1.8%
GAU25
GAC43
Glu E2.5%
GAA76
GAG18
Cys C0.7%
UGU8
UGC19
Trp W2.8%
UGA96
UGG9
Arg R1.7%
CGU4
CGC20
CGA36
CGG4
Gly G5.5%
GGU24
GGC52
GGA89
GGG45
Stop 0.2%
UAA7
UAG1
AGA0
AGG0

Genome map

38 annotated features in NC_020758.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (40.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16767 bp+–
12S rRNARibosomal RNA681,013946 bp+38.5%
tRNA-ValTransfer RNA1,0141,08067 bp+–
16S rRNARibosomal RNA1,0812,6391,559 bp+38.8%
tRNA-Leu (UUR)Transfer RNA2,6402,71475 bp+–
ND1Protein-coding gene2,7153,669955 bp+42.9%
tRNA-IleTransfer RNA3,6703,73869 bp+–
tRNA-GlnTransfer RNA3,7363,80772 bp−–
tRNA-MetTransfer RNA3,8113,87969 bp+–
ND2Protein-coding gene3,8804,9161,037 bp+41.1%
tRNA-TrpTransfer RNA4,9174,98165 bp+–
tRNA-AlaTransfer RNA4,9855,05369 bp−–
tRNA-AsnTransfer RNA5,0565,12671 bp−–
tRNA-CysTransfer RNA5,1585,22568 bp−–
tRNA-TyrTransfer RNA5,2275,29165 bp−–
COX1Protein-coding gene5,2936,8371,545 bp+44.1%
tRNA-Ser (UCN)Transfer RNA6,8356,90369 bp−–
tRNA-AspTransfer RNA6,9076,97468 bp+–
COX2Protein-coding gene6,9767,659684 bp+41.5%
tRNA-LysTransfer RNA7,6637,72563 bp+–
ATP8Protein-coding gene7,7277,930204 bp+36.3%
ATP6Protein-coding gene7,8888,568681 bp+40.8%
COX3Protein-coding gene8,5689,351784 bp+44.1%
tRNA-GlyTransfer RNA9,3529,41968 bp+–
ND3Protein-coding gene9,4209,767348 bp+41.4%
tRNA-ArgTransfer RNA9,7699,83668 bp+–
ND4LProtein-coding gene9,83710,133297 bp+42.1%
ND4Protein-coding gene10,12711,4981,372 bp+39.1%
tRNA-HisTransfer RNA11,49911,56870 bp+–
tRNA-Ser (AGY)Transfer RNA11,56911,62759 bp+–
tRNA-Leu (CUN)Transfer RNA11,62711,69670 bp+–
ND5Protein-coding gene11,69713,5291,833 bp+41.3%
ND6Protein-coding gene13,50414,028525 bp−39.8%
tRNA-GluTransfer RNA14,02914,09769 bp−–
CYTBProtein-coding gene14,10215,2421,141 bp+41.9%
tRNA-ThrTransfer RNA15,24315,31068 bp+–
tRNA-ProTransfer RNA15,31115,37767 bp−–
D-loopControl region15,38016,217838 bp–37.5%

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