Allenopithecus nigroviridis

Allen's swamp monkey

Maximum lifespan

27 yr

AnAge record

mtDNA size

16,517 bp

RefSeq NC_023965.1

GC content

40.87%

Whole genome

Non-coding

1,174 bp

D-loop 1,072 bp

Where Allen's swamp monkey sits among 2,335 species

Whole-genome GC content against maximum lifespan. Allen's swamp monkey has the 552nd longest lifespan of them.

This species
Other mammals
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,517 bp

GC skew (G − C) / (G + C): −0.402
AT skew (A − T) / (A + T): +0.094

Life history

Maximum lifespan: 27 years
Adult weight: 4.7 kg
Birth weight: 221 g
Litter or clutch size: 1

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 02710)

About this record

Lifespan source: AnAge build 15
Based on: an animal in captivity
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,517 bp

Protein-coding11,364 bp

12S rRNA949 bp

16S rRNA1,563 bp

All tRNA1,496 bp

D-loop1,072 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Allenopithecus nigroviridis genes

ND1NADH dehydrogenase subunit 1	955 bp	30.9%	26.6%	10.4%	32.1%	42.51%	−0.512	+0.075
ND2NADH dehydrogenase subunit 2	1,042 bp	34.5%	24.6%	7.8%	33.2%	40.98%	−0.621	+0.167
COX1Cytochrome c oxidase subunit I	1,569 bp	27.5%	30.1%	15.9%	26.5%	42.45%	−0.249	−0.045
COX2Cytochrome c oxidase subunit II	684 bp	32.6%	27.5%	12.4%	27.5%	39.91%	−0.377	+0.085
ATP8ATP synthase F0 subunit 8	207 bp	40.6%	24.2%	6.8%	28.5%	35.27%	−0.616	+0.254
ATP6ATP synthase F0 subunit 6	681 bp	32.6%	28.2%	9.0%	30.2%	39.21%	−0.543	+0.072
COX3Cytochrome c oxidase subunit III	784 bp	26.8%	28.8%	13.6%	30.7%	44.39%	−0.385	−0.037
ND3NADH dehydrogenase subunit 3	346 bp	32.9%	29.5%	9.2%	28.3%	37.57%	−0.508	+0.056
ND4LNADH dehydrogenase subunit 4L	297 bp	30.6%	32.7%	10.4%	26.3%	36.70%	−0.431	−0.032
ND4NADH dehydrogenase subunit 4	1,378 bp	32.3%	29.3%	9.4%	29.0%	38.39%	−0.512	+0.048
ND5NADH dehydrogenase subunit 5	1,812 bp	32.2%	28.0%	10.3%	29.5%	39.79%	−0.481	+0.069
ND6NADH dehydrogenase subunit 6	522 bp	41.2%	20.3%	6.7%	31.8%	38.51%	−0.652	+0.340
CYTBCytochrome b	1,141 bp	29.9%	27.2%	10.8%	32.2%	42.95%	−0.498	+0.048
12S rRNA12S ribosomal RNA	949 bp	34.1%	22.7%	17.8%	25.4%	43.20%	−0.176	+0.202
16S rRNA16S ribosomal RNA	1,563 bp	35.8%	23.0%	17.1%	24.1%	41.20%	−0.171	+0.217
D-loopControl region (D-loop)	1,072 bp	29.0%	26.5%	12.6%	31.9%	44.50%	−0.434	+0.045

Codon usage

Counts per codon, darker is more frequent

Gene

3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F5.8%

UUU99

UUC120

Leu L16.5%

UUA102

UUG17

CUU97

CUC103

CUA282

CUG26

Ile I8.8%

AUU153

AUC181

Met M6.3%

AUA205

AUG36

Val V3.9%

GUU34

GUC42

GUA59

GUG12

Ser S7.3%

UCU53

UCC81

UCA78

UCG9

AGU18

AGC39

Pro P5.4%

CCU45

CCC82

CCA76

CCG4

Thr T9.9%

ACU78

ACC126

ACA165

ACG8

Ala A5.8%

GCU57

GCC94

GCA65

GCG3

Tyr Y3.5%

UAU53

UAC81

His H2.6%

CAU33

CAC65

Gln Q2.6%

CAA93

CAG5

Asn N4.7%

AAU59

AAC119

Lys K2.4%

AAA86

AAG6

Asp D1.7%

GAU29

GAC35

Glu E2.2%

GAA66

GAG18

Cys C0.6%

UGU9

UGC15

Trp W2.7%

UGA93

UGG9

Arg R1.7%

CGU11

CGC21

CGA29

CGG4

Gly G5.5%

GGU47

GGC71

GGA66

GGG25

Stop 0.2%

UAA5

UAG1

AGA0

AGG1

Genome map

38 annotated features in NC_023965.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (40.9%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Allenopithecus nigroviridis (NC_023965.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	72	72 bp	+	–
12S rRNA	Ribosomal RNA	73	1,021	949 bp	+	43.2%
tRNA-Val	Transfer RNA	1,022	1,090	69 bp	+	–
16S rRNA	Ribosomal RNA	1,091	2,653	1,563 bp	+	41.2%
tRNA-Leu (UUR)	Transfer RNA	2,654	2,728	75 bp	+	–
ND1	Protein-coding gene	2,731	3,685	955 bp	+	42.5%
tRNA-Ile	Transfer RNA	3,686	3,754	69 bp	+	–
tRNA-Gln	Transfer RNA	3,752	3,823	72 bp	−	–
tRNA-Met	Transfer RNA	3,825	3,892	68 bp	+	–
ND2	Protein-coding gene	3,893	4,934	1,042 bp	+	41.0%
tRNA-Trp	Transfer RNA	4,935	5,000	66 bp	+	–
tRNA-Ala	Transfer RNA	5,006	5,073	68 bp	−	–
tRNA-Asn	Transfer RNA	5,075	5,147	73 bp	−	–
tRNA-Cys	Transfer RNA	5,181	5,245	65 bp	−	–
tRNA-Tyr	Transfer RNA	5,246	5,310	65 bp	−	–
COX1	Protein-coding gene	5,328	6,896	1,569 bp	+	42.5%
tRNA-Ser (UCN)	Transfer RNA	6,869	6,937	69 bp	−	–
tRNA-Asp	Transfer RNA	6,941	7,008	68 bp	+	–
COX2	Protein-coding gene	7,010	7,693	684 bp	+	39.9%
tRNA-Lys	Transfer RNA	7,725	7,790	66 bp	+	–
ATP8	Protein-coding gene	7,792	7,998	207 bp	+	35.3%
ATP6	Protein-coding gene	7,953	8,633	681 bp	+	39.2%
COX3	Protein-coding gene	8,633	9,416	784 bp	+	44.4%
tRNA-Gly	Transfer RNA	9,417	9,484	68 bp	+	–
ND3	Protein-coding gene	9,485	9,830	346 bp	+	37.6%
tRNA-Arg	Transfer RNA	9,831	9,895	65 bp	+	–
ND4L	Protein-coding gene	9,896	10,192	297 bp	+	36.7%
ND4	Protein-coding gene	10,186	11,563	1,378 bp	+	38.4%
tRNA-His	Transfer RNA	11,564	11,632	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,633	11,691	59 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,692	11,762	71 bp	+	–
ND5	Protein-coding gene	11,763	13,574	1,812 bp	+	39.8%
ND6	Protein-coding gene	13,575	14,096	522 bp	−	38.5%
tRNA-Glu	Transfer RNA	14,096	14,165	70 bp	−	–
CYTB	Protein-coding gene	14,170	15,310	1,141 bp	+	43.0%
tRNA-Thr	Transfer RNA	15,311	15,374	64 bp	+	–
tRNA-Pro	Transfer RNA	15,378	15,445	68 bp	−	–
D-loop	Control region	15,446	16,517	1,072 bp	–	44.5%