Alosa alosa

Alice shad

Maximum lifespan

10 yr

AnAge record

mtDNA size

16,698 bp

RefSeq NC_009575.1

GC content

47.24%

Whole genome

Non-coding

1,106 bp

D-loop 1,041 bp

Where Alice shad sits among 2,335 species

Whole-genome GC content against maximum lifespan. Alice shad has the 1,552nd longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,698 bp

GC skew (G − C) / (G + C): −0.223
AT skew (A − T) / (A + T): +0.058

Life history

Maximum lifespan: 10 years
Adult weight: 2.2 kg
Female sexual maturity: 4.5 years
Male sexual maturity: 3.5 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03827)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,698 bp

Protein-coding11,403 bp

12S rRNA951 bp

16S rRNA1,684 bp

All tRNA1,554 bp

D-loop1,041 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Alosa alosa genes

ND1NADH dehydrogenase subunit 1	975 bp	23.8%	26.9%	17.8%	31.5%	49.33%	−0.277	−0.061
ND2NADH dehydrogenase subunit 2	1,045 bp	26.2%	23.1%	14.6%	36.0%	50.67%	−0.422	+0.064
COX1Cytochrome c oxidase subunit I	1,551 bp	24.4%	28.0%	20.4%	27.1%	47.58%	−0.141	−0.068
COX2Cytochrome c oxidase subunit II	691 bp	28.8%	25.5%	17.4%	28.4%	45.73%	−0.241	+0.061
ATP8ATP synthase F0 subunit 8	168 bp	31.5%	28.0%	12.5%	28.0%	40.48%	−0.382	+0.060
ATP6ATP synthase F0 subunit 6	683 bp	25.8%	27.7%	15.2%	31.3%	46.56%	−0.346	−0.036
COX3Cytochrome c oxidase subunit III	785 bp	25.1%	25.5%	18.5%	31.0%	49.43%	−0.253	−0.008
ND3NADH dehydrogenase subunit 3	349 bp	23.5%	28.1%	17.5%	30.9%	48.42%	−0.278	−0.089
ND4LNADH dehydrogenase subunit 4L	297 bp	23.9%	27.3%	17.2%	31.6%	48.82%	−0.297	−0.066
ND4NADH dehydrogenase subunit 4	1,381 bp	26.6%	26.5%	17.5%	29.5%	46.92%	−0.256	+0.001
ND5NADH dehydrogenase subunit 5	1,836 bp	27.9%	25.3%	15.7%	31.2%	46.84%	−0.330	+0.049
ND6NADH dehydrogenase subunit 6	522 bp	39.1%	14.6%	14.8%	31.6%	46.36%	−0.364	+0.457
CYTBCytochrome b	1,141 bp	25.9%	27.9%	17.4%	28.8%	46.28%	−0.246	−0.038
12S rRNA12S ribosomal RNA	951 bp	29.1%	20.1%	22.9%	27.9%	50.79%	−0.097	+0.184
16S rRNA16S ribosomal RNA	1,684 bp	33.0%	19.1%	22.1%	25.8%	47.98%	−0.077	+0.267
D-loopControl region (D-loop)	1,041 bp	32.8%	30.2%	15.9%	21.2%	37.08%	−0.145	+0.041

Codon usage

Counts per codon, darker is more frequent

Gene

3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.2%

UUU86

UUC151

Leu L16.1%

UUA79

UUG32

CUU119

CUC109

CUA205

CUG67

Ile I6.8%

AUU140

AUC120

Met M4.3%

AUA66

AUG98

Val V6.5%

GUU59

GUC53

GUA94

GUG41

Ser S6.4%

UCU37

UCC71

UCA73

UCG5

AGU11

AGC46

Pro P5.8%

CCU49

CCC89

CCA68

CCG15

Thr T7.9%

ACU50

ACC110

ACA119

ACG23

Ala A9.7%

GCU42

GCC185

GCA118

GCG23

Tyr Y3.0%

UAU37

UAC78

His H2.7%

CAU17

CAC87

Gln Q2.5%

CAA82

CAG12

Asn N2.9%

AAU35

AAC76

Lys K2.0%

AAA62

AAG13

Asp D2.0%

GAU17

GAC59

Glu E2.5%

GAA66

GAG31

Cys C0.8%

UGU15

UGC14

Trp W3.2%

UGA96

UGG24

Arg R2.0%

CGU8

CGC8

CGA46

CGG13

Gly G6.5%

GGU28

GGC64

GGA86

GGG71

Stop 0.2%

UAA4

UAG2

AGA0

AGG0

Genome map

38 annotated features in NC_009575.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (47.2%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Alosa alosa (NC_009575.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	69	69 bp	+	–
12S rRNA	Ribosomal RNA	70	1,020	951 bp	+	50.8%
tRNA-Val	Transfer RNA	1,021	1,092	72 bp	+	–
16S rRNA	Ribosomal RNA	1,093	2,776	1,684 bp	+	48.0%
tRNA-Leu (UUR)	Transfer RNA	2,777	2,853	77 bp	+	–
ND1	Protein-coding gene	2,854	3,828	975 bp	+	49.3%
tRNA-Ile	Transfer RNA	3,837	3,908	72 bp	+	–
tRNA-Gln	Transfer RNA	3,908	3,978	71 bp	−	–
tRNA-Met	Transfer RNA	3,978	4,046	69 bp	+	–
ND2	Protein-coding gene	4,047	5,091	1,045 bp	+	50.7%
tRNA-Trp	Transfer RNA	5,092	5,163	72 bp	+	–
tRNA-Ala	Transfer RNA	5,165	5,233	69 bp	−	–
tRNA-Asn	Transfer RNA	5,234	5,307	74 bp	−	–
tRNA-Cys	Transfer RNA	5,340	5,405	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,408	5,478	71 bp	−	–
COX1	Protein-coding gene	5,480	7,030	1,551 bp	+	47.6%
tRNA-Ser (UCN)	Transfer RNA	7,031	7,101	71 bp	−	–
tRNA-Asp	Transfer RNA	7,106	7,174	69 bp	+	–
COX2	Protein-coding gene	7,187	7,877	691 bp	+	45.7%
tRNA-Lys	Transfer RNA	7,878	7,951	74 bp	+	–
ATP8	Protein-coding gene	7,953	8,120	168 bp	+	40.5%
ATP6	Protein-coding gene	8,111	8,793	683 bp	+	46.6%
COX3	Protein-coding gene	8,794	9,578	785 bp	+	49.4%
tRNA-Gly	Transfer RNA	9,579	9,650	72 bp	+	–
ND3	Protein-coding gene	9,651	9,999	349 bp	+	48.4%
tRNA-Arg	Transfer RNA	10,000	10,069	70 bp	+	–
ND4L	Protein-coding gene	10,070	10,366	297 bp	+	48.8%
ND4	Protein-coding gene	10,360	11,740	1,381 bp	+	46.9%
tRNA-His	Transfer RNA	11,741	11,809	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,810	11,876	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,877	11,948	72 bp	+	–
ND5	Protein-coding gene	11,949	13,784	1,836 bp	+	46.8%
ND6	Protein-coding gene	13,781	14,302	522 bp	−	46.4%
tRNA-Glu	Transfer RNA	14,303	14,371	69 bp	−	–
CYTB	Protein-coding gene	14,376	15,516	1,141 bp	+	46.3%
tRNA-Thr	Transfer RNA	15,517	15,588	72 bp	+	–
tRNA-Pro	Transfer RNA	15,588	15,657	70 bp	−	–
D-loop	Control region	15,658	16,698	1,041 bp	–	37.1%