Alosa pseudoharengus

Alewife

Maximum lifespan

8 yr

AnAge record

mtDNA size

16,646 bp

RefSeq NC_009576.1

GC content

46.47%

Whole genome

Non-coding

1,056 bp

D-loop 992 bp

Where Alewife sits among 2,335 species

Whole-genome GC content against maximum lifespan. Alewife has the 1,717th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,646 bp

GC skew (G − C) / (G + C): −0.230
AT skew (A − T) / (A + T): +0.060

Life history

Maximum lifespan: 8 years
Adult weight: 110 g
Female sexual maturity: 4.5 years
Male sexual maturity: 3.5 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03833)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,646 bp

Protein-coding11,403 bp

12S rRNA952 bp

16S rRNA1,684 bp

All tRNA1,551 bp

D-loop992 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Alosa pseudoharengus genes

ND1NADH dehydrogenase subunit 1	975 bp	24.4%	27.8%	17.2%	30.6%	47.80%	−0.279	−0.065
ND2NADH dehydrogenase subunit 2	1,045 bp	26.4%	23.6%	14.6%	35.3%	49.95%	−0.414	+0.055
COX1Cytochrome c oxidase subunit I	1,551 bp	25.0%	28.1%	20.2%	26.8%	46.94%	−0.140	−0.060
COX2Cytochrome c oxidase subunit II	691 bp	28.5%	26.9%	17.8%	26.8%	44.57%	−0.201	+0.029
ATP8ATP synthase F0 subunit 8	168 bp	31.0%	27.4%	13.1%	28.6%	41.67%	−0.371	+0.061
ATP6ATP synthase F0 subunit 6	683 bp	26.9%	28.7%	13.6%	30.7%	44.36%	−0.386	−0.032
COX3Cytochrome c oxidase subunit III	785 bp	26.0%	26.1%	17.6%	30.3%	47.90%	−0.266	−0.002
ND3NADH dehydrogenase subunit 3	349 bp	25.8%	29.5%	16.3%	28.4%	44.70%	−0.269	−0.067
ND4LNADH dehydrogenase subunit 4L	297 bp	24.6%	27.6%	16.5%	31.3%	47.81%	−0.310	−0.058
ND4NADH dehydrogenase subunit 4	1,381 bp	27.2%	26.9%	16.7%	29.1%	45.84%	−0.270	+0.005
ND5NADH dehydrogenase subunit 5	1,836 bp	28.5%	26.1%	14.9%	30.5%	45.43%	−0.343	+0.044
ND6NADH dehydrogenase subunit 6	522 bp	39.1%	15.3%	14.4%	31.2%	45.59%	−0.370	+0.437
CYTBCytochrome b	1,141 bp	26.6%	27.5%	16.5%	29.4%	45.93%	−0.282	−0.018
12S rRNA12S ribosomal RNA	952 bp	29.0%	20.4%	23.0%	27.6%	50.63%	−0.091	+0.174
16S rRNA16S ribosomal RNA	1,684 bp	33.0%	18.6%	22.2%	26.1%	48.34%	−0.081	+0.278
D-loopControl region (D-loop)	992 bp	33.6%	29.4%	15.3%	21.7%	37.00%	−0.172	+0.066

Codon usage

Counts per codon, darker is more frequent

Gene

3,805 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.1%

UUU86

UUC148

Leu L16.1%

UUA94

UUG17

CUU136

CUC96

CUA198

CUG71

Ile I6.9%

AUU141

AUC120

Met M4.3%

AUA71

AUG94

Val V6.4%

GUU63

GUC47

GUA98

GUG36

Ser S6.4%

UCU50

UCC56

UCA74

UCG6

AGU13

AGC45

Pro P5.8%

CCU61

CCC80

CCA67

CCG13

Thr T7.9%

ACU54

ACC110

ACA120

ACG18

Ala A9.6%

GCU45

GCC181

GCA122

GCG18

Tyr Y3.1%

UAU34

UAC84

His H2.7%

CAU16

CAC85

Gln Q2.5%

CAA80

CAG16

Asn N2.9%

AAU38

AAC73

Lys K2.0%

AAA67

AAG8

Asp D2.0%

GAU20

GAC58

Glu E2.6%

GAA75

GAG23

Cys C0.8%

UGU17

UGC13

Trp W3.2%

UGA108

UGG12

Arg R2.0%

CGU8

CGC5

CGA50

CGG12

Gly G6.5%

GGU31

GGC58

GGA98

GGG61

Stop 0.2%

UAA4

UAG2

AGA0

AGG0

Genome map

38 annotated features in NC_009576.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (46.5%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Alosa pseudoharengus (NC_009576.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,020	952 bp	+	50.6%
tRNA-Val	Transfer RNA	1,021	1,092	72 bp	+	–
16S rRNA	Ribosomal RNA	1,093	2,776	1,684 bp	+	48.3%
tRNA-Leu (UUR)	Transfer RNA	2,777	2,852	76 bp	+	–
ND1	Protein-coding gene	2,853	3,827	975 bp	+	47.8%
tRNA-Ile	Transfer RNA	3,836	3,907	72 bp	+	–
tRNA-Gln	Transfer RNA	3,907	3,977	71 bp	−	–
tRNA-Met	Transfer RNA	3,977	4,045	69 bp	+	–
ND2	Protein-coding gene	4,046	5,090	1,045 bp	+	50.0%
tRNA-Trp	Transfer RNA	5,091	5,162	72 bp	+	–
tRNA-Ala	Transfer RNA	5,164	5,232	69 bp	−	–
tRNA-Asn	Transfer RNA	5,233	5,306	74 bp	−	–
tRNA-Cys	Transfer RNA	5,338	5,403	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,406	5,476	71 bp	−	–
COX1	Protein-coding gene	5,478	7,028	1,551 bp	+	46.9%
tRNA-Ser (UCN)	Transfer RNA	7,029	7,099	71 bp	−	–
tRNA-Asp	Transfer RNA	7,104	7,172	69 bp	+	–
COX2	Protein-coding gene	7,185	7,875	691 bp	+	44.6%
tRNA-Lys	Transfer RNA	7,876	7,949	74 bp	+	–
ATP8	Protein-coding gene	7,951	8,118	168 bp	+	41.7%
ATP6	Protein-coding gene	8,109	8,791	683 bp	+	44.4%
COX3	Protein-coding gene	8,792	9,576	785 bp	+	47.9%
tRNA-Gly	Transfer RNA	9,577	9,648	72 bp	+	–
ND3	Protein-coding gene	9,649	9,997	349 bp	+	44.7%
tRNA-Arg	Transfer RNA	9,998	10,067	70 bp	+	–
ND4L	Protein-coding gene	10,068	10,364	297 bp	+	47.8%
ND4	Protein-coding gene	10,358	11,738	1,381 bp	+	45.8%
tRNA-His	Transfer RNA	11,739	11,807	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,808	11,874	67 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,875	11,946	72 bp	+	–
ND5	Protein-coding gene	11,947	13,782	1,836 bp	+	45.4%
ND6	Protein-coding gene	13,779	14,300	522 bp	−	45.6%
tRNA-Glu	Transfer RNA	14,301	14,369	69 bp	−	–
CYTB	Protein-coding gene	14,374	15,514	1,141 bp	+	45.9%
tRNA-Thr	Transfer RNA	15,515	15,585	71 bp	+	–
tRNA-Pro	Transfer RNA	15,585	15,654	70 bp	−	–
D-loop	Control region	15,655	16,646	992 bp	–	37.0%