Amia calva

Bowfin

Maximum lifespan

30 yr

AnAge record

mtDNA size

16,210 bp

RefSeq NC_004742.1

GC content

43.55%

Whole genome

Non-coding

572 bp

D-loop 488 bp

Where Bowfin sits among 2,335 species

Whole-genome GC content against maximum lifespan. Bowfin has the 439th longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,210 bp

GC skew (G − C) / (G + C): −0.288
AT skew (A − T) / (A + T): +0.088

Life history

Maximum lifespan: 30 years
Adult weight: 5.4 kg
Female sexual maturity: 4.2 years
Male sexual maturity: 4 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 01883)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,210 bp

Protein-coding11,406 bp

12S rRNA963 bp

16S rRNA1,708 bp

All tRNA1,562 bp

D-loop488 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Amia calva genes

ND1NADH dehydrogenase subunit 1	975 bp	29.0%	26.6%	13.4%	31.0%	44.41%	−0.395	+0.044
ND2NADH dehydrogenase subunit 2	1,045 bp	31.4%	25.5%	12.0%	31.2%	43.16%	−0.446	+0.104
COX1Cytochrome c oxidase subunit I	1,551 bp	26.4%	27.0%	18.5%	28.0%	46.55%	−0.205	−0.011
COX2Cytochrome c oxidase subunit II	688 bp	30.4%	26.2%	16.4%	27.0%	43.46%	−0.244	+0.075
ATP8ATP synthase F0 subunit 8	168 bp	32.1%	23.2%	11.9%	32.7%	44.64%	−0.467	+0.161
ATP6ATP synthase F0 subunit 6	684 bp	29.4%	28.4%	12.1%	30.1%	42.25%	−0.426	+0.018
COX3Cytochrome c oxidase subunit III	786 bp	28.5%	26.1%	16.5%	28.9%	45.42%	−0.272	+0.044
ND3NADH dehydrogenase subunit 3	349 bp	25.5%	28.4%	14.6%	31.5%	46.13%	−0.366	−0.053
ND4LNADH dehydrogenase subunit 4L	297 bp	24.2%	25.9%	15.2%	34.7%	49.83%	−0.392	−0.034
ND4NADH dehydrogenase subunit 4	1,381 bp	28.7%	26.6%	14.6%	30.1%	44.68%	−0.348	+0.039
ND5NADH dehydrogenase subunit 5	1,842 bp	31.2%	26.3%	13.0%	29.5%	42.51%	−0.390	+0.084
ND6NADH dehydrogenase subunit 6	522 bp	43.1%	14.6%	10.9%	31.4%	42.34%	−0.484	+0.495
CYTBCytochrome b	1,140 bp	27.3%	28.9%	14.6%	29.1%	43.77%	−0.331	−0.030
12S rRNA12S ribosomal RNA	963 bp	32.4%	22.1%	20.9%	24.6%	45.48%	−0.082	+0.189
16S rRNA16S ribosomal RNA	1,708 bp	35.8%	21.7%	18.3%	24.2%	42.56%	−0.139	+0.246
D-loopControl region (D-loop)	488 bp	37.7%	37.1%	8.4%	16.8%	25.21%	−0.333	+0.008

Codon usage

Counts per codon, darker is more frequent

Gene

3,808 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.3%

UUU100

UUC139

Leu L16.4%

UUA83

UUG22

CUU92

CUC108

CUA276

CUG45

Ile I7.7%

AUU149

AUC145

Met M4.8%

AUA133

AUG51

Val V5.8%

GUU53

GUC48

GUA105

GUG13

Ser S6.2%

UCU35

UCC66

UCA75

UCG3

AGU11

AGC47

Pro P5.6%

CCU30

CCC69

CCA102

CCG13

Thr T7.9%

ACU63

ACC118

ACA109

ACG9

Ala A8.7%

GCU63

GCC143

GCA119

GCG7

Tyr Y3.0%

UAU53

UAC61

His H2.9%

CAU27

CAC82

Gln Q2.7%

CAA87

CAG14

Asn N3.0%

AAU42

AAC73

Lys K2.0%

AAA71

AAG6

Asp D2.2%

GAU34

GAC48

Glu E2.4%

GAA75

GAG18

Cys C0.7%

UGU6

UGC21

Trp W3.2%

UGA105

UGG16

Arg R2.0%

CGU5

CGC14

CGA52

CGG5

Gly G6.3%

GGU22

GGC72

GGA100

GGG46

Stop 0.2%

UAA9

UAG0

AGA0

AGG0

Genome map

38 annotated features in NC_004742.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (43.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Amia calva (NC_004742.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,031	963 bp	+	45.5%
tRNA-Val	Transfer RNA	1,032	1,103	72 bp	+	–
16S rRNA	Ribosomal RNA	1,104	2,811	1,708 bp	+	42.6%
tRNA-Leu (UUR)	Transfer RNA	2,812	2,886	75 bp	+	–
ND1	Protein-coding gene	2,887	3,861	975 bp	+	44.4%
tRNA-Ile	Transfer RNA	3,872	3,943	72 bp	+	–
tRNA-Gln	Transfer RNA	3,943	4,013	71 bp	−	–
tRNA-Met	Transfer RNA	4,013	4,081	69 bp	+	–
ND2	Protein-coding gene	4,082	5,126	1,045 bp	+	43.2%
tRNA-Trp	Transfer RNA	5,127	5,198	72 bp	+	–
tRNA-Ala	Transfer RNA	5,202	5,270	69 bp	−	–
tRNA-Asn	Transfer RNA	5,272	5,344	73 bp	−	–
tRNA-Cys	Transfer RNA	5,382	5,447	66 bp	−	–
tRNA-Tyr	Transfer RNA	5,448	5,518	71 bp	−	–
COX1	Protein-coding gene	5,520	7,070	1,551 bp	+	46.6%
tRNA-Ser (UCN)	Transfer RNA	7,071	7,142	72 bp	−	–
tRNA-Asp	Transfer RNA	7,150	7,222	73 bp	+	–
COX2	Protein-coding gene	7,238	7,925	688 bp	+	43.5%
tRNA-Lys	Transfer RNA	7,926	7,999	74 bp	+	–
ATP8	Protein-coding gene	8,001	8,168	168 bp	+	44.6%
ATP6	Protein-coding gene	8,159	8,842	684 bp	+	42.3%
COX3	Protein-coding gene	8,842	9,627	786 bp	+	45.4%
tRNA-Gly	Transfer RNA	9,627	9,698	72 bp	+	–
ND3	Protein-coding gene	9,699	10,047	349 bp	+	46.1%
tRNA-Arg	Transfer RNA	10,048	10,117	70 bp	+	–
ND4L	Protein-coding gene	10,118	10,414	297 bp	+	49.8%
ND4	Protein-coding gene	10,408	11,788	1,381 bp	+	44.7%
tRNA-His	Transfer RNA	11,789	11,858	70 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,858	11,928	71 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,931	12,003	73 bp	+	–
ND5	Protein-coding gene	12,004	13,845	1,842 bp	+	42.5%
ND6	Protein-coding gene	13,842	14,363	522 bp	−	42.3%
tRNA-Glu	Transfer RNA	14,364	14,433	70 bp	−	–
CYTB	Protein-coding gene	14,436	15,575	1,140 bp	+	43.8%
tRNA-Thr	Transfer RNA	15,577	15,647	71 bp	+	–
tRNA-Pro	Transfer RNA	15,652	15,722	71 bp	−	–
D-loop	Control region	15,723	16,210	488 bp	–	25.2%