Ammodytes hexapterus

Pacific sand lance

Maximum lifespan

8 yr

AnAge record

mtDNA size

16,527 bp

RefSeq NC_020461.1

GC content

47.42%

Whole genome

Non-coding

926 bp

D-loop 862 bp

Where Pacific sand lance sits among 2,335 species

Whole-genome GC content against maximum lifespan. Pacific sand lance has the 1,723rd longest lifespan of them.

This species
Other ray-finned fishes
Other classes

Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,527 bp

GC skew (G − C) / (G + C): −0.245
AT skew (A − T) / (A + T): −0.009

Life history

Maximum lifespan: 8 years
Female sexual maturity: 2.5 years
Male sexual maturity: 2.5 years

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 04095)

About this record

Lifespan source: AnAge build 15
Based on: an animal in the wild
Data quality: acceptable, medium sample
Licence: Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status: Unchanged since build 1
In the database since: build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq

Whole genome16,527 bp

Protein-coding11,415 bp

12S rRNA945 bp

16S rRNA1,696 bp

All tRNA1,554 bp

D-loop862 bp

Genes and regions

Select a column to sort; select a gene to compare it across species

Base composition of Ammodytes hexapterus genes

ND1NADH dehydrogenase subunit 1	975 bp	22.1%	29.7%	18.2%	30.1%	48.21%	−0.247	−0.149
ND2NADH dehydrogenase subunit 2	1,046 bp	22.0%	26.6%	17.2%	34.2%	51.43%	−0.331	−0.094
COX1Cytochrome c oxidase subunit I	1,560 bp	23.3%	29.6%	18.9%	28.1%	47.05%	−0.196	−0.119
COX2Cytochrome c oxidase subunit II	690 bp	28.1%	26.2%	16.5%	29.1%	45.65%	−0.276	+0.035
ATP8ATP synthase F0 subunit 8	168 bp	32.7%	25.0%	10.1%	32.1%	42.26%	−0.521	+0.134
ATP6ATP synthase F0 subunit 6	684 bp	22.1%	30.1%	13.7%	34.1%	47.81%	−0.425	−0.154
COX3Cytochrome c oxidase subunit III	785 bp	22.5%	26.9%	18.3%	32.2%	50.57%	−0.275	−0.088
ND3NADH dehydrogenase subunit 3	349 bp	18.6%	29.5%	17.5%	34.4%	51.86%	−0.326	−0.226
ND4LNADH dehydrogenase subunit 4L	297 bp	20.5%	29.6%	15.8%	34.0%	49.83%	−0.365	−0.181
ND4NADH dehydrogenase subunit 4	1,381 bp	23.6%	28.6%	16.4%	31.4%	47.79%	−0.312	−0.096
ND5NADH dehydrogenase subunit 5	1,839 bp	25.6%	27.8%	15.6%	31.1%	46.66%	−0.333	−0.042
ND6NADH dehydrogenase subunit 6	522 bp	32.4%	16.5%	17.8%	33.3%	51.15%	−0.303	+0.325
CYTBCytochrome b	1,141 bp	21.4%	30.0%	17.4%	31.2%	48.64%	−0.283	−0.167
12S rRNA12S ribosomal RNA	945 bp	31.0%	19.9%	22.5%	26.6%	49.10%	−0.082	+0.218
16S rRNA16S ribosomal RNA	1,696 bp	32.7%	20.9%	20.8%	25.6%	46.40%	−0.105	+0.221
D-loopControl region (D-loop)	862 bp	30.7%	29.5%	16.4%	23.4%	39.79%	−0.178	+0.021

Codon usage

Counts per codon, darker is more frequent

Gene

3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.0%

UUU92

UUC137

Leu L17.3%

UUA87

UUG19

CUU192

CUC151

CUA130

CUG81

Ile I6.7%

AUU148

AUC109

Met M4.0%

AUA63

AUG88

Val V6.2%

GUU62

GUC77

GUA71

GUG28

Ser S6.4%

UCU59

UCC64

UCA50

UCG16

AGU13

AGC42

Pro P5.8%

CCU69

CCC102

CCA37

CCG13

Thr T7.8%

ACU66

ACC121

ACA82

ACG28

Ala A9.2%

GCU74

GCC160

GCA90

GCG28

Tyr Y3.0%

UAU31

UAC82

His H2.7%

CAU23

CAC81

Gln Q2.6%

CAA69

CAG31

Asn N3.1%

AAU43

AAC76

Lys K2.0%

AAA54

AAG21

Asp D2.0%

GAU13

GAC62

Glu E2.6%

GAA66

GAG33

Cys C0.7%

UGU9

UGC18

Trp W3.1%

UGA88

UGG29

Arg R2.0%

CGU13

CGC16

CGA33

CGG15

Gly G6.5%

GGU43

GGC93

GGA64

GGG47

Stop 0.2%

UAA5

UAG2

AGA0

AGG1

Genome map

38 annotated features in NC_020461.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

Protein-coding13
rRNA2
tRNA22
D-loop1

Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
Middle ring: GC% of each gene against the whole genome (47.4%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).

All 38 features as a table

Annotated features of Ammodytes hexapterus (NC_020461.1)
Feature	Type	Start	End	Length	Strand	GC
tRNA-Phe	Transfer RNA	1	68	68 bp	+	–
12S rRNA	Ribosomal RNA	69	1,013	945 bp	+	49.1%
tRNA-Val	Transfer RNA	1,014	1,087	74 bp	+	–
16S rRNA	Ribosomal RNA	1,088	2,783	1,696 bp	+	46.4%
tRNA-Leu (UUR)	Transfer RNA	2,784	2,857	74 bp	+	–
ND1	Protein-coding gene	2,858	3,832	975 bp	+	48.2%
tRNA-Ile	Transfer RNA	3,837	3,907	71 bp	+	–
tRNA-Gln	Transfer RNA	3,907	3,977	71 bp	−	–
tRNA-Met	Transfer RNA	3,977	4,045	69 bp	+	–
ND2	Protein-coding gene	4,046	5,091	1,046 bp	+	51.4%
tRNA-Trp	Transfer RNA	5,092	5,162	71 bp	+	–
tRNA-Ala	Transfer RNA	5,164	5,232	69 bp	−	–
tRNA-Asn	Transfer RNA	5,234	5,306	73 bp	−	–
tRNA-Cys	Transfer RNA	5,341	5,407	67 bp	−	–
tRNA-Tyr	Transfer RNA	5,408	5,478	71 bp	−	–
COX1	Protein-coding gene	5,480	7,039	1,560 bp	+	47.1%
tRNA-Ser (UCN)	Transfer RNA	7,031	7,101	71 bp	−	–
tRNA-Asp	Transfer RNA	7,105	7,177	73 bp	+	–
COX2	Protein-coding gene	7,186	7,875	690 bp	+	45.7%
tRNA-Lys	Transfer RNA	7,877	7,950	74 bp	+	–
ATP8	Protein-coding gene	7,952	8,119	168 bp	+	42.3%
ATP6	Protein-coding gene	8,110	8,793	684 bp	+	47.8%
COX3	Protein-coding gene	8,793	9,577	785 bp	+	50.6%
tRNA-Gly	Transfer RNA	9,578	9,648	71 bp	+	–
ND3	Protein-coding gene	9,649	9,997	349 bp	+	51.9%
tRNA-Arg	Transfer RNA	9,998	10,066	69 bp	+	–
ND4L	Protein-coding gene	10,067	10,363	297 bp	+	49.8%
ND4	Protein-coding gene	10,357	11,737	1,381 bp	+	47.8%
tRNA-His	Transfer RNA	11,738	11,806	69 bp	+	–
tRNA-Ser (AGY)	Transfer RNA	11,807	11,874	68 bp	+	–
tRNA-Leu (CUN)	Transfer RNA	11,880	11,952	73 bp	+	–
ND5	Protein-coding gene	11,953	13,791	1,839 bp	+	46.7%
ND6	Protein-coding gene	13,788	14,309	522 bp	−	51.2%
tRNA-Glu	Transfer RNA	14,310	14,378	69 bp	−	–
CYTB	Protein-coding gene	14,384	15,524	1,141 bp	+	48.6%
tRNA-Thr	Transfer RNA	15,525	15,596	72 bp	+	–
tRNA-Pro	Transfer RNA	15,596	15,665	70 bp	−	–
D-loop	Control region	15,666	16,527	862 bp	–	39.8%