Amphiprion clarkii
Black clown
GC content
44.70%
Whole genome
Non-coding
1,324 bp
D-loop 1,231 bp
Where Black clown sits among 2,335 species
Whole-genome GC content against maximum lifespan. Black clown has the 1,488th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,976 bp
- GC skew (G − C) / (G + C)
- −0.299
- AT skew (A − T) / (A + T)
- +0.054
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in the wild
- Data quality
- acceptable, medium sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,976 bp
Protein-coding11,450 bp
12S rRNA950 bp
16S rRNA1,697 bp
All tRNA1,555 bp
D-loop1,231 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.74% | −0.408 | +0.006 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 45.74% | −0.498 | +0.069 | |||||
| COX1Cytochrome c oxidase subunit I | 1,566 bp | 45.28% | −0.196 | −0.102 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.71% | −0.298 | +0.028 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 42.86% | −0.472 | +0.063 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 43.63% | −0.423 | −0.018 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.90% | −0.335 | −0.012 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 46.99% | −0.402 | −0.135 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.82% | −0.434 | −0.092 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.20% | −0.398 | −0.001 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,869 bp | 43.55% | −0.415 | +0.048 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 44.64% | −0.476 | +0.426 | |||||
| CYTBCytochrome b | 1,141 bp | 44.96% | −0.384 | −0.035 | |||||
| 12S rRNA12S ribosomal RNA | 950 bp | 48.11% | −0.059 | +0.197 | |||||
| 16S rRNA16S ribosomal RNA | 1,697 bp | 44.67% | −0.090 | +0.216 | |||||
| D-loopControl region (D-loop) | 1,231 bp | 35.58% | −0.251 | +0.039 |
Codon usage
Counts per codon, darker is more frequent3,821 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.5%
UUU98
UUC150
Leu L17.0%
UUA94
UUG12
CUU144
CUC151
CUA213
CUG37
Ile I7.0%
AUU156
AUC113
Met M4.4%
AUA114
AUG55
Val V5.5%
GUU55
GUC48
GUA88
GUG20
Ser S6.4%
UCU38
UCC97
UCA55
UCG5
AGU13
AGC35
Pro P5.7%
CCU62
CCC76
CCA75
CCG5
Thr T7.9%
ACU60
ACC122
ACA113
ACG7
Ala A9.2%
GCU69
GCC163
GCA108
GCG10
Tyr Y2.8%
UAU42
UAC65
His H2.7%
CAU28
CAC77
Gln Q2.6%
CAA91
CAG7
Asn N3.1%
AAU34
AAC85
Lys K2.1%
AAA75
AAG5
Asp D2.1%
GAU21
GAC58
Glu E2.7%
GAA86
GAG16
Cys C0.7%
UGU7
UGC20
Trp W3.2%
UGA111
UGG10
Arg R2.0%
CGU7
CGC9
CGA55
CGG4
Gly G6.3%
GGU31
GGC90
GGA86
GGG34
Stop 0.2%
UAA5
UAG0
AGA1
AGG0
Genome map
38 annotated features in NC_023967.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (44.7%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,019 | 950 bp | + | 48.1% |
| tRNA-Val | Transfer RNA | 1,020 | 1,091 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,092 | 2,788 | 1,697 bp | + | 44.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,789 | 2,862 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,863 | 3,837 | 975 bp | + | 45.7% |
| tRNA-Ile | Transfer RNA | 3,842 | 3,911 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,911 | 3,981 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,981 | 4,049 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,050 | 5,094 | 1,045 bp | + | 45.7% |
| tRNA-Trp | Transfer RNA | 5,095 | 5,166 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,170 | 5,238 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,240 | 5,312 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,346 | 5,412 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,414 | 5,484 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,486 | 7,051 | 1,566 bp | + | 45.3% |
| tRNA-Ser (UCN) | Transfer RNA | 7,077 | 7,147 | 71 bp | + | – |
| tRNA-Asp | Transfer RNA | 7,151 | 7,222 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,229 | 7,919 | 691 bp | + | 43.7% |
| tRNA-Lys | Transfer RNA | 7,920 | 7,993 | 74 bp | + | – |
| ATP8 | Protein-coding gene | 7,996 | 8,163 | 168 bp | + | 42.9% |
| ATP6 | Protein-coding gene | 8,154 | 8,836 | 683 bp | + | 43.6% |
| COX3 | Protein-coding gene | 8,837 | 9,621 | 785 bp | + | 47.9% |
| tRNA-Gly | Transfer RNA | 9,622 | 9,693 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,694 | 10,042 | 349 bp | + | 47.0% |
| tRNA-Arg | Transfer RNA | 10,043 | 10,111 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,112 | 10,408 | 297 bp | + | 48.8% |
| ND4 | Protein-coding gene | 10,402 | 11,782 | 1,381 bp | + | 46.2% |
| tRNA-His | Transfer RNA | 11,783 | 11,851 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,852 | 11,920 | 69 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,931 | 12,003 | 73 bp | + | – |
| ND5 | Protein-coding gene | 12,004 | 13,872 | 1,869 bp | + | 43.6% |
| ND6 | Protein-coding gene | 13,868 | 14,389 | 522 bp | − | 44.6% |
| tRNA-Glu | Transfer RNA | 14,391 | 14,459 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,462 | 15,602 | 1,141 bp | + | 45.0% |
| tRNA-Thr | Transfer RNA | 15,603 | 15,674 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,676 | 15,745 | 70 bp | − | – |
| D-loop | Control region | 15,746 | 16,976 | 1,231 bp | – | 35.6% |