Anabas testudineus
Climbing perch
GC content
45.58%
Whole genome
Non-coding
1,056 bp
D-loop 821 bp
Where Climbing perch sits among 2,335 species
Whole-genome GC content against maximum lifespan. Climbing perch has the 1,724th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,603 bp
- GC skew (G − C) / (G + C)
- −0.290
- AT skew (A − T) / (A + T)
- +0.052
About this record
- Lifespan source
- AnAge build 15
- Based on
- an animal in captivity
- Data quality
- acceptable, small sample
- Licence
- Free to use, subject to the Human Ageing Genomic Resources conditions of use
- Status
- Unchanged since build 1
- In the database since
- build 1 (2015-07-01)
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,603 bp
Protein-coding11,418 bp
12S rRNA948 bp
16S rRNA1,653 bp
All tRNA1,528 bp
D-loop821 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 47.08% | −0.364 | −0.023 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 48.47% | −0.456 | +0.054 | |||||
| COX1Cytochrome c oxidase subunit I | 1,560 bp | 45.13% | −0.199 | −0.110 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 44.14% | −0.318 | +0.052 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 41.67% | −0.600 | +0.082 | |||||
| ATP6ATP synthase F0 subunit 6 | 683 bp | 48.17% | −0.410 | −0.062 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.01% | −0.312 | −0.019 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 49.28% | −0.384 | −0.198 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 49.16% | −0.356 | −0.099 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 47.14% | −0.413 | +0.049 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.30% | −0.397 | +0.044 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.89% | −0.400 | +0.441 | |||||
| CYTBCytochrome b | 1,143 bp | 46.54% | −0.350 | −0.051 | |||||
| 12S rRNA12S ribosomal RNA | 948 bp | 48.52% | −0.070 | +0.209 | |||||
| 16S rRNA16S ribosomal RNA | 1,653 bp | 43.38% | −0.082 | +0.205 | |||||
| D-loopControl region (D-loop) | 821 bp | 37.39% | −0.231 | +0.004 |
Codon usage
Counts per codon, darker is more frequent3,810 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.3%
UUU92
UUC147
Leu L17.1%
UUA92
UUG21
CUU150
CUC159
CUA187
CUG41
Ile I7.4%
AUU136
AUC146
Met M4.1%
AUA111
AUG46
Val V5.4%
GUU46
GUC65
GUA66
GUG30
Ser S6.4%
UCU45
UCC71
UCA60
UCG9
AGU7
AGC51
Pro P5.9%
CCU46
CCC99
CCA68
CCG13
Thr T8.0%
ACU64
ACC116
ACA114
ACG12
Ala A9.3%
GCU68
GCC153
GCA118
GCG17
Tyr Y3.0%
UAU41
UAC74
His H2.6%
CAU15
CAC83
Gln Q2.4%
CAA78
CAG15
Asn N3.2%
AAU36
AAC85
Lys K2.1%
AAA70
AAG9
Asp D2.0%
GAU22
GAC56
Glu E2.5%
GAA75
GAG22
Cys C0.7%
UGU6
UGC20
Trp W3.1%
UGA93
UGG24
Arg R2.1%
CGU5
CGC18
CGA49
CGG8
Gly G6.1%
GGU34
GGC79
GGA77
GGG43
Stop 0.2%
UAA4
UAG3
AGA0
AGG0
Genome map
38 annotated features in NC_024752.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.6%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,016 | 948 bp | + | 48.5% |
| tRNA-Val | Transfer RNA | 1,017 | 1,088 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,092 | 2,744 | 1,653 bp | + | 43.4% |
| tRNA-Leu (UUR) | Transfer RNA | 2,770 | 2,843 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,844 | 3,818 | 975 bp | + | 47.1% |
| tRNA-Ile | Transfer RNA | 3,823 | 3,892 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,892 | 3,962 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,962 | 4,030 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,031 | 5,076 | 1,046 bp | + | 48.5% |
| tRNA-Trp | Transfer RNA | 5,077 | 5,148 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,150 | 5,219 | 70 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,220 | 5,292 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,335 | 5,409 | 75 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,393 | 5,462 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,464 | 7,023 | 1,560 bp | + | 45.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,024 | 7,094 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,097 | 7,166 | 70 bp | + | – |
| COX2 | Protein-coding gene | 7,172 | 7,862 | 691 bp | + | 44.1% |
| tRNA-Lys | Transfer RNA | 7,873 | 7,933 | 61 bp | + | – |
| ATP8 | Protein-coding gene | 7,938 | 8,105 | 168 bp | + | 41.7% |
| ATP6 | Protein-coding gene | 8,096 | 8,778 | 683 bp | + | 48.2% |
| COX3 | Protein-coding gene | 8,779 | 9,563 | 785 bp | + | 47.0% |
| tRNA-Gly | Transfer RNA | 9,564 | 9,636 | 73 bp | + | – |
| ND3 | Protein-coding gene | 9,637 | 9,985 | 349 bp | + | 49.3% |
| tRNA-Arg | Transfer RNA | 9,986 | 10,054 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,055 | 10,351 | 297 bp | + | 49.2% |
| ND4 | Protein-coding gene | 10,345 | 11,725 | 1,381 bp | + | 47.1% |
| tRNA-His | Transfer RNA | 11,726 | 11,794 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,795 | 11,862 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,867 | 11,939 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,940 | 13,778 | 1,839 bp | + | 45.3% |
| ND6 | Protein-coding gene | 13,775 | 14,296 | 522 bp | − | 47.9% |
| tRNA-Glu | Transfer RNA | 14,298 | 14,366 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,499 | 15,641 | 1,143 bp | + | 46.5% |
| tRNA-Thr | Transfer RNA | 15,643 | 15,713 | 71 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,713 | 15,782 | 70 bp | − | – |
| D-loop | Control region | 15,783 | 16,603 | 821 bp | – | 37.4% |