Anchoa mitchilli
Bay anchovy
GC content
45.32%
Whole genome
Non-coding
1,068 bp
Including the D-loop
Where Bay anchovy sits among 2,335 species
Whole-genome GC content against maximum lifespan. Bay anchovy has the 2,221st longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,659 bp
- GC skew (G − C) / (G + C)
- −0.226
- AT skew (A − T) / (A + T)
- +0.030
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an observed animal, origin not stated
- Data quality
- questionable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,659 bp
Protein-coding11,397 bp
12S rRNA949 bp
16S rRNA1,696 bp
All tRNA1,549 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 45.74% | −0.256 | −0.055 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,045 bp | 48.90% | −0.429 | +0.019 | |||||
| COX1Cytochrome c oxidase subunit I | 1,545 bp | 44.08% | −0.131 | −0.065 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 43.27% | −0.204 | +0.036 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 42.26% | −0.408 | +0.031 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 43.57% | −0.289 | −0.098 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 47.52% | −0.233 | −0.053 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 44.99% | −0.248 | −0.115 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 48.15% | −0.245 | −0.013 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 45.26% | −0.312 | −0.032 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,836 bp | 44.88% | −0.301 | +0.008 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 47.32% | −0.344 | +0.396 | |||||
| CYTBCytochrome b | 1,141 bp | 44.87% | −0.277 | −0.062 | |||||
| 12S rRNA12S ribosomal RNA | 949 bp | 49.21% | −0.109 | +0.203 | |||||
| 16S rRNA16S ribosomal RNA | 1,696 bp | 45.64% | −0.090 | +0.228 |
Codon usage
Counts per codon, darker is more frequent3,804 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.2%
UUU106
UUC131
Leu L15.9%
UUA91
UUG32
CUU152
CUC104
CUA161
CUG66
Ile I7.3%
AUU160
AUC118
Met M4.2%
AUA73
AUG88
Val V6.2%
GUU76
GUC46
GUA84
GUG30
Ser S6.1%
UCU52
UCC57
UCA60
UCG9
AGU12
AGC41
Pro P5.7%
CCU61
CCC79
CCA54
CCG21
Thr T8.4%
ACU62
ACC126
ACA108
ACG24
Ala A9.5%
GCU75
GCC117
GCA146
GCG25
Tyr Y2.9%
UAU36
UAC73
His H2.7%
CAU27
CAC77
Gln Q2.7%
CAA76
CAG26
Asn N3.1%
AAU44
AAC75
Lys K2.0%
AAA62
AAG14
Asp D1.9%
GAU25
GAC48
Glu E2.7%
GAA77
GAG25
Cys C0.8%
UGU14
UGC16
Trp W3.1%
UGA109
UGG10
Arg R1.9%
CGU8
CGC9
CGA47
CGG9
Gly G6.4%
GGU32
GGC53
GGA108
GGG50
Stop 0.2%
UAA7
UAG0
AGA0
AGG0
Genome map
37 annotated features in NC_082550.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (45.3%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 69 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 70 | 1,018 | 949 bp | + | 49.2% |
| tRNA-Val | Transfer RNA | 1,019 | 1,090 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,091 | 2,786 | 1,696 bp | + | 45.6% |
| tRNA-Leu (UUR) | Transfer RNA | 2,787 | 2,861 | 75 bp | + | – |
| ND1 | Protein-coding gene | 2,863 | 3,837 | 975 bp | + | 45.7% |
| tRNA-Ile | Transfer RNA | 3,839 | 3,910 | 72 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,910 | 3,980 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,980 | 4,048 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,049 | 5,093 | 1,045 bp | + | 48.9% |
| tRNA-Trp | Transfer RNA | 5,094 | 5,165 | 72 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,167 | 5,235 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,237 | 5,309 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,340 | 5,405 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,406 | 5,476 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,478 | 7,022 | 1,545 bp | + | 44.1% |
| tRNA-Ser (UCN) | Transfer RNA | 7,023 | 7,093 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,099 | 7,166 | 68 bp | + | – |
| COX2 | Protein-coding gene | 7,177 | 7,867 | 691 bp | + | 43.3% |
| tRNA-Lys | Transfer RNA | 7,868 | 7,940 | 73 bp | + | – |
| ATP8 | Protein-coding gene | 7,942 | 8,109 | 168 bp | + | 42.3% |
| ATP6 | Protein-coding gene | 8,100 | 8,783 | 684 bp | + | 43.6% |
| COX3 | Protein-coding gene | 8,783 | 9,567 | 785 bp | + | 47.5% |
| tRNA-Gly | Transfer RNA | 9,568 | 9,638 | 71 bp | + | – |
| ND3 | Protein-coding gene | 9,639 | 9,987 | 349 bp | + | 45.0% |
| tRNA-Arg | Transfer RNA | 9,988 | 10,056 | 69 bp | + | – |
| ND4L | Protein-coding gene | 10,057 | 10,353 | 297 bp | + | 48.2% |
| ND4 | Protein-coding gene | 10,347 | 11,727 | 1,381 bp | + | 45.3% |
| tRNA-His | Transfer RNA | 11,728 | 11,796 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,798 | 11,864 | 67 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,865 | 11,936 | 72 bp | + | – |
| ND5 | Protein-coding gene | 11,937 | 13,772 | 1,836 bp | + | 44.9% |
| ND6 | Protein-coding gene | 13,769 | 14,290 | 522 bp | − | 47.3% |
| tRNA-Glu | Transfer RNA | 14,291 | 14,359 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,365 | 15,505 | 1,141 bp | + | 44.9% |
| tRNA-Thr | Transfer RNA | 15,506 | 15,578 | 73 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,578 | 15,648 | 71 bp | − | – |