Aphareus rutilans
Rusty jobfish
GC content
46.05%
Whole genome
Non-coding
915 bp
D-loop 545 bp
Where Rusty jobfish sits among 2,335 species
Whole-genome GC content against maximum lifespan. Rusty jobfish has the 1,170th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,510 bp
- GC skew (G − C) / (G + C)
- −0.274
- AT skew (A − T) / (A + T)
- +0.050
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in the wild
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,510 bp
Protein-coding11,408 bp
12S rRNA954 bp
16S rRNA1,677 bp
All tRNA1,556 bp
D-loop545 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 975 bp | 46.05% | −0.336 | −0.004 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,046 bp | 49.24% | −0.472 | +0.073 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 45.65% | −0.198 | −0.098 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 42.69% | −0.261 | +0.005 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 46.43% | −0.487 | +0.133 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 43.86% | −0.393 | −0.042 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 45.35% | −0.281 | −0.026 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 51.58% | −0.378 | −0.195 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 50.51% | −0.347 | −0.102 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 46.34% | −0.350 | −0.015 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,839 bp | 45.30% | −0.383 | +0.068 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 45.21% | −0.441 | +0.462 | |||||
| CYTBCytochrome b | 1,142 bp | 47.37% | −0.349 | −0.052 | |||||
| 12S rRNA12S ribosomal RNA | 954 bp | 49.06% | −0.090 | +0.173 | |||||
| 16S rRNA16S ribosomal RNA | 1,677 bp | 45.68% | −0.084 | +0.196 | |||||
| D-loopControl region (D-loop) | 545 bp | 45.51% | −0.105 | −0.010 |
Codon usage
Counts per codon, darker is more frequent3,807 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.1%
UUU105
UUC128
Leu L17.5%
UUA97
UUG15
CUU148
CUC150
CUA201
CUG54
Ile I7.1%
AUU149
AUC120
Met M4.1%
AUA98
AUG58
Val V5.7%
GUU60
GUC63
GUA72
GUG23
Ser S6.5%
UCU45
UCC72
UCA60
UCG13
AGU15
AGC42
Pro P5.7%
CCU35
CCC108
CCA61
CCG14
Thr T8.0%
ACU43
ACC121
ACA122
ACG17
Ala A9.0%
GCU54
GCC157
GCA117
GCG15
Tyr Y2.9%
UAU46
UAC66
His H2.7%
CAU26
CAC77
Gln Q2.7%
CAA90
CAG11
Asn N3.2%
AAU46
AAC74
Lys K1.9%
AAA65
AAG9
Asp D1.9%
GAU17
GAC55
Glu E2.7%
GAA73
GAG31
Cys C0.6%
UGU7
UGC16
Trp W3.2%
UGA105
UGG15
Arg R2.0%
CGU5
CGC13
CGA44
CGG13
Gly G6.4%
GGU36
GGC82
GGA82
GGG44
Stop 0.2%
UAA6
UAG1
AGA0
AGG0
Genome map
38 annotated features in NC_063973.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- D-loop1
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (46.0%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 1 | 68 | 68 bp | + | – |
| 12S rRNA | Ribosomal RNA | 69 | 1,022 | 954 bp | + | 49.1% |
| tRNA-Val | Transfer RNA | 1,023 | 1,095 | 73 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,120 | 2,796 | 1,677 bp | + | 45.7% |
| tRNA-Leu (UUR) | Transfer RNA | 2,797 | 2,870 | 74 bp | + | – |
| ND1 | Protein-coding gene | 2,871 | 3,845 | 975 bp | + | 46.1% |
| tRNA-Ile | Transfer RNA | 3,849 | 3,918 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 3,918 | 3,988 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 3,988 | 4,056 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,057 | 5,102 | 1,046 bp | + | 49.2% |
| tRNA-Trp | Transfer RNA | 5,103 | 5,175 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,176 | 5,244 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,246 | 5,318 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,358 | 5,424 | 67 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,425 | 5,495 | 71 bp | − | – |
| COX1 | Protein-coding gene | 5,497 | 7,047 | 1,551 bp | + | 45.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,049 | 7,119 | 71 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,123 | 7,194 | 72 bp | + | – |
| COX2 | Protein-coding gene | 7,203 | 7,893 | 691 bp | + | 42.7% |
| tRNA-Lys | Transfer RNA | 7,894 | 7,968 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 7,970 | 8,137 | 168 bp | + | 46.4% |
| ATP6 | Protein-coding gene | 8,128 | 8,811 | 684 bp | + | 43.9% |
| COX3 | Protein-coding gene | 8,811 | 9,595 | 785 bp | + | 45.4% |
| tRNA-Gly | Transfer RNA | 9,596 | 9,667 | 72 bp | + | – |
| ND3 | Protein-coding gene | 9,668 | 10,016 | 349 bp | + | 51.6% |
| tRNA-Arg | Transfer RNA | 10,017 | 10,086 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,087 | 10,383 | 297 bp | + | 50.5% |
| ND4 | Protein-coding gene | 10,377 | 11,757 | 1,381 bp | + | 46.3% |
| tRNA-His | Transfer RNA | 11,758 | 11,826 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 11,827 | 11,894 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 11,899 | 11,971 | 73 bp | + | – |
| ND5 | Protein-coding gene | 11,972 | 13,810 | 1,839 bp | + | 45.3% |
| ND6 | Protein-coding gene | 13,807 | 14,328 | 522 bp | − | 45.2% |
| tRNA-Glu | Transfer RNA | 14,329 | 14,397 | 69 bp | − | – |
| CYTB | Protein-coding gene | 14,403 | 15,544 | 1,142 bp | + | 47.4% |
| tRNA-Thr | Transfer RNA | 15,545 | 15,616 | 72 bp | + | – |
| tRNA-Pro | Transfer RNA | 15,616 | 15,685 | 70 bp | − | – |
| D-loop | Control region | 15,916 | 16,460 | 545 bp | – | 45.5% |