Aphyosemion australe
Lyretail panchax
GC content
37.77%
Whole genome
Non-coding
1,020 bp
Including the D-loop
Where Lyretail panchax sits among 2,335 species
Whole-genome GC content against maximum lifespan. Lyretail panchax has the 2,196th longest lifespan of them.
- This species
- Other ray-finned fishes
- Other classes
Base composition
Whole genome16,597 bp
- GC skew (G − C) / (G + C)
- −0.225
- AT skew (A − T) / (A + T)
- +0.005
About this record
- Lifespan source
- FishBase v26.06
- Based on
- an animal in captivity
- Data quality
- acceptable
- Licence
- CC BY-NC 4.0
- Status
- New in build 2
- In the database since
- build 2 (2026-11-13)
The lifespan value is for non-commercial use only; the genome data is not restricted by it.
Every change against the 2015 build is in the changelog download.
Composition by region
Reference (L) strand as deposited in RefSeqWhole genome16,597 bp
Protein-coding11,383 bp
12S rRNA948 bp
16S rRNA1,698 bp
All tRNA1,549 bp
Genes and regions
Select a column to sort; select a gene to compare it across species| Composition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| ND1NADH dehydrogenase subunit 1 | 963 bp | 38.11% | −0.297 | −0.064 | |||||
| ND2NADH dehydrogenase subunit 2 | 1,040 bp | 35.87% | −0.405 | −0.013 | |||||
| COX1Cytochrome c oxidase subunit I | 1,551 bp | 37.65% | −0.123 | −0.115 | |||||
| COX2Cytochrome c oxidase subunit II | 691 bp | 37.19% | −0.222 | −0.037 | |||||
| ATP8ATP synthase F0 subunit 8 | 168 bp | 36.91% | −0.387 | +0.075 | |||||
| ATP6ATP synthase F0 subunit 6 | 684 bp | 37.14% | −0.354 | −0.121 | |||||
| COX3Cytochrome c oxidase subunit III | 785 bp | 40.13% | −0.194 | −0.094 | |||||
| ND3NADH dehydrogenase subunit 3 | 349 bp | 38.68% | −0.289 | −0.168 | |||||
| ND4LNADH dehydrogenase subunit 4L | 297 bp | 40.40% | −0.350 | −0.175 | |||||
| ND4NADH dehydrogenase subunit 4 | 1,381 bp | 37.00% | −0.319 | −0.078 | |||||
| ND5NADH dehydrogenase subunit 5 | 1,848 bp | 34.90% | −0.284 | −0.002 | |||||
| ND6NADH dehydrogenase subunit 6 | 522 bp | 38.70% | −0.485 | +0.381 | |||||
| CYTBCytochrome b | 1,137 bp | 37.38% | −0.285 | −0.084 | |||||
| 12S rRNA12S ribosomal RNA | 948 bp | 40.93% | −0.088 | +0.175 | |||||
| 16S rRNA16S ribosomal RNA | 1,698 bp | 37.93% | −0.056 | +0.203 |
Codon usage
Counts per codon, darker is more frequent3,803 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).
Phe F6.6%
UUU162
UUC88
Leu L16.4%
UUA243
UUG22
CUU152
CUC61
CUA128
CUG19
Ile I8.3%
AUU256
AUC59
Met M4.4%
AUA135
AUG34
Val V5.6%
GUU76
GUC36
GUA84
GUG17
Ser S6.7%
UCU70
UCC50
UCA77
UCG5
AGU24
AGC28
Pro P5.5%
CCU80
CCC57
CCA65
CCG6
Thr T7.4%
ACU63
ACC80
ACA131
ACG6
Ala A8.3%
GCU81
GCC92
GCA135
GCG8
Tyr Y3.0%
UAU73
UAC42
His H2.7%
CAU64
CAC38
Gln Q2.7%
CAA96
CAG7
Asn N3.7%
AAU79
AAC60
Lys K2.1%
AAA76
AAG5
Asp D2.0%
GAU48
GAC29
Glu E2.5%
GAA89
GAG7
Cys C0.7%
UGU16
UGC11
Trp W3.2%
UGA110
UGG10
Arg R1.9%
CGU7
CGC5
CGA53
CGG7
Gly G6.1%
GGU59
GGC45
GGA103
GGG26
Stop 0.2%
UAA8
UAG0
AGA0
AGG0
Genome map
37 annotated features in NC_044451.1Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.
- Protein-coding13
- rRNA2
- tRNA22
- Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
- Middle ring: GC% of each gene against the whole genome (37.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 37 features as a table
| Feature | Type | Start | End | Length | Strand | GC |
|---|---|---|---|---|---|---|
| tRNA-Phe | Transfer RNA | 461 | 529 | 69 bp | + | – |
| 12S rRNA | Ribosomal RNA | 530 | 1,477 | 948 bp | + | 40.9% |
| tRNA-Val | Transfer RNA | 1,478 | 1,549 | 72 bp | + | – |
| 16S rRNA | Ribosomal RNA | 1,551 | 3,248 | 1,698 bp | + | 37.9% |
| tRNA-Leu (UUR) | Transfer RNA | 3,258 | 3,331 | 74 bp | + | – |
| ND1 | Protein-coding gene | 3,345 | 4,307 | 963 bp | + | 38.1% |
| tRNA-Ile | Transfer RNA | 4,310 | 4,379 | 70 bp | + | – |
| tRNA-Gln | Transfer RNA | 4,379 | 4,449 | 71 bp | − | – |
| tRNA-Met | Transfer RNA | 4,449 | 4,517 | 69 bp | + | – |
| ND2 | Protein-coding gene | 4,518 | 5,557 | 1,040 bp | + | 35.9% |
| tRNA-Trp | Transfer RNA | 5,558 | 5,630 | 73 bp | + | – |
| tRNA-Ala | Transfer RNA | 5,632 | 5,700 | 69 bp | − | – |
| tRNA-Asn | Transfer RNA | 5,702 | 5,774 | 73 bp | − | – |
| tRNA-Cys | Transfer RNA | 5,815 | 5,880 | 66 bp | − | – |
| tRNA-Tyr | Transfer RNA | 5,881 | 5,950 | 70 bp | − | – |
| COX1 | Protein-coding gene | 5,958 | 7,508 | 1,551 bp | + | 37.7% |
| tRNA-Ser (UCN) | Transfer RNA | 7,514 | 7,587 | 74 bp | − | – |
| tRNA-Asp | Transfer RNA | 7,591 | 7,659 | 69 bp | + | – |
| COX2 | Protein-coding gene | 7,665 | 8,355 | 691 bp | + | 37.2% |
| tRNA-Lys | Transfer RNA | 8,356 | 8,430 | 75 bp | + | – |
| ATP8 | Protein-coding gene | 8,432 | 8,599 | 168 bp | + | 36.9% |
| ATP6 | Protein-coding gene | 8,590 | 9,273 | 684 bp | + | 37.1% |
| COX3 | Protein-coding gene | 9,273 | 10,057 | 785 bp | + | 40.1% |
| tRNA-Gly | Transfer RNA | 10,057 | 10,126 | 70 bp | + | – |
| ND3 | Protein-coding gene | 10,127 | 10,475 | 349 bp | + | 38.7% |
| tRNA-Arg | Transfer RNA | 10,476 | 10,545 | 70 bp | + | – |
| ND4L | Protein-coding gene | 10,546 | 10,842 | 297 bp | + | 40.4% |
| ND4 | Protein-coding gene | 10,836 | 12,216 | 1,381 bp | + | 37.0% |
| tRNA-His | Transfer RNA | 12,217 | 12,285 | 69 bp | + | – |
| tRNA-Ser (AGY) | Transfer RNA | 12,286 | 12,353 | 68 bp | + | – |
| tRNA-Leu (CUN) | Transfer RNA | 12,358 | 12,429 | 72 bp | + | – |
| ND5 | Protein-coding gene | 12,430 | 14,277 | 1,848 bp | + | 34.9% |
| ND6 | Protein-coding gene | 14,263 | 14,784 | 522 bp | − | 38.7% |
| tRNA-Glu | Transfer RNA | 14,785 | 14,852 | 68 bp | − | – |
| CYTB | Protein-coding gene | 14,860 | 15,996 | 1,137 bp | + | 37.4% |
| tRNA-Thr | Transfer RNA | 15,999 | 16,069 | 71 bp | + | – |
| tRNA-Pro | Transfer RNA | 16,069 | 16,138 | 70 bp | − | – |