MitoAge

Apodemus peninsulae

Korean field mouse

Add to compare Download FASTA
Maximum lifespan
4.4 yr
AnAge record
mtDNA size
16,269 bp
RefSeq NC_016060.1
GC content
34.80%
Whole genome
Non-coding
921 bp
D-loop 867 bp

Where Korean field mouse sits among 2,335 species

Whole-genome GC content against maximum lifespan. Korean field mouse has the 2,066th longest lifespan of them.

10203040501 yr10 yr100 yrMaximum lifespan, log scaleGC %Korean field mouse
  • This species
  • Other mammals
  • Other classes
Plot other mtDNA features with this species highlighted

Base composition

Whole genome16,269 bp
GC skew (G − C) / (G + C)
−0.298
AT skew (A − T) / (A + T)
+0.057

Life history

Maximum lifespan
4.4 years
Adult weight
32.9 g
Birth weight
2 g
Female sexual maturity
51 days
Male sexual maturity
52 days
Gestation or incubation
26 days
Litter or clutch size
4.7

Lifespan from AnAge · AnAge record · other traits from AnAge Build 15 (HAGRID 03022)

About this record

Lifespan source
AnAge build 15
Based on
an animal in captivity
Data quality
acceptable, tiny sample
Licence
Free to use, subject to the Human Ageing Genomic Resources conditions of use
Status
Unchanged since build 1
In the database since
build 1 (2015-07-01)

Every change against the 2015 build is in the changelog download.

Composition by region

Reference (L) strand as deposited in RefSeq
Whole genome16,269 bp
Protein-coding11,331 bp
12S rRNA954 bp
16S rRNA1,573 bp
All tRNA1,493 bp
D-loop867 bp

Genes and regions

Select a column to sort; select a gene to compare it across species
Composition
ND1NADH dehydrogenase subunit 1955 bp31.3%33.0%11.2%24.5%35.71%−0.372−0.026
ND2NADH dehydrogenase subunit 21,036 bp36.2%33.1%6.8%23.9%30.70%−0.560+0.045
COX1Cytochrome c oxidase subunit I1,545 bp30.9%31.5%15.3%22.3%37.67%−0.186−0.009
COX2Cytochrome c oxidase subunit II684 bp35.2%29.7%12.9%22.2%35.09%−0.267+0.086
ATP8ATP synthase F0 subunit 8204 bp33.3%30.9%6.4%29.4%35.78%−0.644+0.038
ATP6ATP synthase F0 subunit 6681 bp32.9%32.6%9.5%25.0%34.51%−0.447+0.004
COX3Cytochrome c oxidase subunit III784 bp30.4%31.6%13.9%24.1%38.01%−0.268−0.021
ND3NADH dehydrogenase subunit 3348 bp34.8%33.3%9.2%22.7%31.90%−0.423+0.021
ND4LNADH dehydrogenase subunit 4L297 bp30.6%33.0%11.1%25.3%36.36%−0.389−0.037
ND4NADH dehydrogenase subunit 41,378 bp34.3%32.3%9.9%23.5%33.45%−0.406+0.029
ND5NADH dehydrogenase subunit 51,819 bp34.6%31.2%9.8%24.3%34.14%−0.424+0.052
ND6NADH dehydrogenase subunit 6519 bp43.5%22.4%7.5%26.6%34.10%−0.559+0.322
CYTBCytochrome b1,144 bp31.0%30.9%12.7%25.3%38.02%−0.333+0.001
12S rRNA12S ribosomal RNA954 bp37.7%27.0%16.2%19.0%35.22%−0.077+0.165
16S rRNA16S ribosomal RNA1,573 bp38.3%27.9%16.6%17.2%33.76%−0.017+0.157
D-loopControl region (D-loop)867 bp33.2%32.8%11.2%22.8%34.03%−0.342+0.007

Codon usage

Counts per codon, darker is more frequent

3,796 codons in all protein-coding genes. Grouped with the Vertebrate mitochondrial code (NCBI table 2).

Phe F6.4%
UUU147
UUC95
Leu L15.6%
UUA162
UUG12
CUU114
CUC57
CUA228
CUG20
Ile I9.8%
AUU269
AUC103
Met M6.3%
AUA207
AUG32
Val V4.3%
GUU45
GUC21
GUA83
GUG15
Ser S7.8%
UCU61
UCC39
UCA143
UCG3
AGU18
AGC33
Pro P5.2%
CCU42
CCC26
CCA129
CCG2
Thr T8.1%
ACU78
ACC66
ACA162
ACG3
Ala A5.9%
GCU69
GCC62
GCA91
GCG1
Tyr Y3.5%
UAU79
UAC54
His H2.6%
CAU49
CAC49
Gln Q2.2%
CAA81
CAG1
Asn N4.3%
AAU68
AAC94
Lys K2.7%
AAA94
AAG9
Asp D2.0%
GAU40
GAC35
Glu E2.4%
GAA80
GAG12
Cys C0.7%
UGU10
UGC18
Trp W2.7%
UGA100
UGG3
Arg R1.7%
CGU8
CGC12
CGA44
CGG0
Gly G5.6%
GGU41
GGC44
GGA109
GGG17
Stop 0.2%
UAA6
UAG1
AGA0
AGG0

Genome map

38 annotated features in NC_016060.1

Hover, tap or tab to a feature to see its position, length, strand and GC content. Genes and rRNAs open their own pages.

  • Protein-coding13
  • rRNA2
  • tRNA22
  • D-loop1
  • Outer ring: + strand, arrows run clockwise. Inner ring: − strand.
  • Middle ring: GC% of each gene against the whole genome (34.8%, dashed): out is GC-richer, in is AT-richer (full height = 6 points).
All 38 features as a table
FeatureTypeStartEndLengthStrandGC
tRNA-PheTransfer RNA16767 bp+–
12S rRNARibosomal RNA691,022954 bp+35.2%
tRNA-ValTransfer RNA1,0231,09169 bp+–
16S rRNARibosomal RNA1,0922,6641,573 bp+33.8%
tRNA-Leu (UUR)Transfer RNA2,6652,73975 bp+–
ND1Protein-coding gene2,7403,694955 bp+35.7%
tRNA-IleTransfer RNA3,6953,76369 bp+–
tRNA-GlnTransfer RNA3,7613,83272 bp−–
tRNA-MetTransfer RNA3,8353,90369 bp+–
ND2Protein-coding gene3,9044,9391,036 bp+30.7%
tRNA-TrpTransfer RNA4,9405,00768 bp+–
tRNA-AlaTransfer RNA5,0095,07769 bp−–
tRNA-AsnTransfer RNA5,0795,14971 bp−–
tRNA-CysTransfer RNA5,1815,24565 bp−–
tRNA-TyrTransfer RNA5,2475,31367 bp−–
COX1Protein-coding gene5,3156,8591,545 bp+37.7%
tRNA-Ser (UCN)Transfer RNA6,8576,92569 bp−–
tRNA-AspTransfer RNA6,9296,99668 bp+–
COX2Protein-coding gene6,9987,681684 bp+35.1%
tRNA-LysTransfer RNA7,6857,74864 bp+–
ATP8Protein-coding gene7,7507,953204 bp+35.8%
ATP6Protein-coding gene7,9118,591681 bp+34.5%
COX3Protein-coding gene8,5919,374784 bp+38.0%
tRNA-GlyTransfer RNA9,3759,44268 bp+–
ND3Protein-coding gene9,4439,790348 bp+31.9%
tRNA-ArgTransfer RNA9,7929,86069 bp+–
ND4LProtein-coding gene9,86210,158297 bp+36.4%
ND4Protein-coding gene10,15211,5291,378 bp+33.5%
tRNA-HisTransfer RNA11,53111,59666 bp+–
tRNA-Ser (AGY)Transfer RNA11,59711,65559 bp+–
tRNA-Leu (CUN)Transfer RNA11,65511,72571 bp+–
ND5Protein-coding gene11,72613,5441,819 bp+34.1%
ND6Protein-coding gene13,53314,051519 bp−34.1%
tRNA-GluTransfer RNA14,05214,11867 bp−–
CYTBProtein-coding gene14,12415,2671,144 bp+38.0%
tRNA-ThrTransfer RNA15,26815,33568 bp+–
tRNA-ProTransfer RNA15,33615,40267 bp−–
D-loopControl region15,40316,269867 bp–34.0%

Downloads